Cluster: HRGMv2_3878_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: pectin/host glycan
- Genome ID: HRGMv2_3878
- CGC Family ID: CGCFAM_00110
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3878_13 | HRGMv2_3878_13_45 | 59129 | 62332 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3878_13 | HRGMv2_3878_13_46 | 62346 | 64181 | + | SusD_RagB | SusD-like_3 |
| sulfatase | HRGMv2_3878_13 | HRGMv2_3878_13_47 | 64375 | 65949 | + | S1_11 |
| CAZyme | HRGMv2_3878_13 | HRGMv2_3878_13_48 | 65946 | 68279 | + | GH20 |
| sulfatase | HRGMv2_3878_13 | HRGMv2_3878_13_49 | 68402 | 69955 | + | S1_15 |
| CAZyme | HRGMv2_3878_13 | HRGMv2_3878_13_50 | 70019 | 73099 | + | GH2 |
Gene ID: HRGMv2_3878_13_45
Type: TC
Location: 59129 - 62332 (+)
Type: TC
Location: 59129 - 62332 (+)
Gene ID: HRGMv2_3878_13_46
Type: pfam
Location: 62346 - 64181 (+)
Type: pfam
Location: 62346 - 64181 (+)
Gene ID: HRGMv2_3878_13_47
Type: sulfatase
Location: 64375 - 65949 (+)
Type: sulfatase
Location: 64375 - 65949 (+)
Gene ID: HRGMv2_3878_13_48
Type: CAZyme
Location: 65946 - 68279 (+)
Type: CAZyme
Location: 65946 - 68279 (+)
Gene ID: HRGMv2_3878_13_49
Type: sulfatase
Location: 68402 - 69955 (+)
Type: sulfatase
Location: 68402 - 69955 (+)
Gene ID: HRGMv2_3878_13_50
Type: CAZyme
Location: 70019 - 73099 (+)
Type: CAZyme
Location: 70019 - 73099 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Barnesiellaceae
Genus
Barnesiella
Species
Barnesiella merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.