Cluster: HRGMv2_3878_CGC10
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate: host glycan
- Genome ID: HRGMv2_3878
- CGC Family ID: CGCFAM_02941
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3878_7 | HRGMv2_3878_7_47 | 53800 | 57366 | + | 1.B.14.6.2 |
| TC | HRGMv2_3878_7 | HRGMv2_3878_7_48 | 57366 | 59090 | + | 8.A.46.2.1 |
| CAZyme | HRGMv2_3878_7 | HRGMv2_3878_7_49 | 59207 | 62998 | + | GH85 |
| pfam | HRGMv2_3878_7 | HRGMv2_3878_7_50 | 63118 | 65127 | + | Laminin_G_3 | Flg_new_2 |
| NULL(UNKNOWN) | HRGMv2_3878_7 | HRGMv2_3878_7_51 | 65141 | 65242 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3878_7 | HRGMv2_3878_7_52 | 65349 | 68693 | + | GH84 |
| CAZyme | HRGMv2_3878_7 | HRGMv2_3878_7_53 | 68751 | 71021 | + | GH92 |
| CAZyme | HRGMv2_3878_7 | HRGMv2_3878_7_54 | 71065 | 73407 | + | GH20 |
| CAZyme | HRGMv2_3878_7 | HRGMv2_3878_7_55 | 73422 | 75491 | + | GH20 |
| pfam | HRGMv2_3878_7 | HRGMv2_3878_7_56 | 75525 | 76853 | + | MFS_1 | MFS_1 |
| CAZyme | HRGMv2_3878_7 | HRGMv2_3878_7_57 | 76937 | 77908 | + | GH130_2 |
| CAZyme | HRGMv2_3878_7 | HRGMv2_3878_7_58 | 77905 | 80163 | + | GH92 |
| peptidase | HRGMv2_3878_7 | HRGMv2_3878_7_59 | 80266 | 81789 | - | C26.957 |
| TC | HRGMv2_3878_7 | HRGMv2_3878_7_60 | 81802 | 84048 | - | 2.A.37.1.8 |
| TC | HRGMv2_3878_7 | HRGMv2_3878_7_61 | 84051 | 84767 | - | 9.B.20.1.4 |
| TC | HRGMv2_3878_7 | HRGMv2_3878_7_62 | 85033 | 86082 | + | 9.B.97.3.1 |
Gene ID: HRGMv2_3878_7_47
Type: TC
Location: 53800 - 57366 (+)
Type: TC
Location: 53800 - 57366 (+)
Gene ID: HRGMv2_3878_7_48
Type: TC
Location: 57366 - 59090 (+)
Type: TC
Location: 57366 - 59090 (+)
Gene ID: HRGMv2_3878_7_49
Type: CAZyme
Location: 59207 - 62998 (+)
Type: CAZyme
Location: 59207 - 62998 (+)
Gene ID: HRGMv2_3878_7_50
Type: pfam
Location: 63118 - 65127 (+)
Type: pfam
Location: 63118 - 65127 (+)
Gene ID: HRGMv2_3878_7_51
Type:
Location: 65141 - 65242 (+)
Type:
Location: 65141 - 65242 (+)
Gene ID: HRGMv2_3878_7_52
Type: CAZyme
Location: 65349 - 68693 (+)
Type: CAZyme
Location: 65349 - 68693 (+)
Gene ID: HRGMv2_3878_7_53
Type: CAZyme
Location: 68751 - 71021 (+)
Type: CAZyme
Location: 68751 - 71021 (+)
Gene ID: HRGMv2_3878_7_54
Type: CAZyme
Location: 71065 - 73407 (+)
Type: CAZyme
Location: 71065 - 73407 (+)
Gene ID: HRGMv2_3878_7_55
Type: CAZyme
Location: 73422 - 75491 (+)
Type: CAZyme
Location: 73422 - 75491 (+)
Gene ID: HRGMv2_3878_7_56
Type: pfam
Location: 75525 - 76853 (+)
Type: pfam
Location: 75525 - 76853 (+)
Gene ID: HRGMv2_3878_7_57
Type: CAZyme
Location: 76937 - 77908 (+)
Type: CAZyme
Location: 76937 - 77908 (+)
Gene ID: HRGMv2_3878_7_58
Type: CAZyme
Location: 77905 - 80163 (+)
Type: CAZyme
Location: 77905 - 80163 (+)
Gene ID: HRGMv2_3878_7_59
Type: peptidase
Location: 80266 - 81789 (-)
Type: peptidase
Location: 80266 - 81789 (-)
Gene ID: HRGMv2_3878_7_60
Type: TC
Location: 81802 - 84048 (-)
Type: TC
Location: 81802 - 84048 (-)
Gene ID: HRGMv2_3878_7_61
Type: TC
Location: 84051 - 84767 (-)
Type: TC
Location: 84051 - 84767 (-)
Gene ID: HRGMv2_3878_7_62
Type: TC
Location: 85033 - 86082 (+)
Type: TC
Location: 85033 - 86082 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Barnesiellaceae
Genus
Barnesiella
Species
Barnesiella merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.