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Cluster: HRGMv2_3878_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3878_1 HRGMv2_3878_1_23 20734 21489 + 3.A.1.3.15
pfam HRGMv2_3878_1 HRGMv2_3878_1_24 21499 22848 + SUFBD_core | SufBD_N
pfam HRGMv2_3878_1 HRGMv2_3878_1_25 22879 24096 + Aminotran_5
CAZyme HRGMv2_3878_1 HRGMv2_3878_1_26 24156 25151 - GT2
pfam HRGMv2_3878_1 HRGMv2_3878_1_27 25153 26064 - Lip_A_acyltrans
pfam HRGMv2_3878_1 HRGMv2_3878_1_28 26079 27440 - UPF0004 | Radical_SAM
TC HRGMv2_3878_1 HRGMv2_3878_1_29 27545 29206 + 4.C.1.1.7
pfam HRGMv2_3878_1 HRGMv2_3878_1_30 29613 30809 - Gly_kinase
peptidase HRGMv2_3878_1 HRGMv2_3878_1_31 30903 32276 - M38.UNW
CAZyme HRGMv2_3878_1 HRGMv2_3878_1_32 32316 33071 - GT2
Gene ID: HRGMv2_3878_1_23
Type: TC
Location: 20734 - 21489 (+)
Gene ID: HRGMv2_3878_1_24
Type: pfam
Location: 21499 - 22848 (+)
Gene ID: HRGMv2_3878_1_25
Type: pfam
Location: 22879 - 24096 (+)
Gene ID: HRGMv2_3878_1_26
Type: CAZyme
Location: 24156 - 25151 (-)
Gene ID: HRGMv2_3878_1_27
Type: pfam
Location: 25153 - 26064 (-)
Gene ID: HRGMv2_3878_1_28
Type: pfam
Location: 26079 - 27440 (-)
Gene ID: HRGMv2_3878_1_29
Type: TC
Location: 27545 - 29206 (+)
Gene ID: HRGMv2_3878_1_30
Type: pfam
Location: 29613 - 30809 (-)
Gene ID: HRGMv2_3878_1_31
Type: peptidase
Location: 30903 - 32276 (-)
Gene ID: HRGMv2_3878_1_32
Type: CAZyme
Location: 32316 - 33071 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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