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Cluster: HRGMv2_3873_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3873_45 HRGMv2_3873_45_2 300 2678 - 3.B.1.1.6
pfam HRGMv2_3873_45 HRGMv2_3873_45_3 2920 4116 - Gate
pfam HRGMv2_3873_45 HRGMv2_3873_45_4 4147 5190 - Porin_O_P
TC HRGMv2_3873_45 HRGMv2_3873_45_5 5258 6613 - 3.A.5.1.1
pfam HRGMv2_3873_45 HRGMv2_3873_45_6 6651 6998 - Asp_decarbox
pfam HRGMv2_3873_45 HRGMv2_3873_45_7 7010 7876 - Pantoate_ligase
CAZyme HRGMv2_3873_45 HRGMv2_3873_45_8 8122 8931 + GT5
pfam HRGMv2_3873_45 HRGMv2_3873_45_9 8934 10349 + DUF4270
pfam HRGMv2_3873_45 HRGMv2_3873_45_10 10352 11446 + PGA_cap
TC HRGMv2_3873_45 HRGMv2_3873_45_11 11629 13245 + 3.A.1.121.4
Gene ID: HRGMv2_3873_45_2
Type: TC
Location: 300 - 2678 (-)
Gene ID: HRGMv2_3873_45_3
Type: pfam
Location: 2920 - 4116 (-)
Gene ID: HRGMv2_3873_45_4
Type: pfam
Location: 4147 - 5190 (-)
Gene ID: HRGMv2_3873_45_5
Type: TC
Location: 5258 - 6613 (-)
Gene ID: HRGMv2_3873_45_6
Type: pfam
Location: 6651 - 6998 (-)
Gene ID: HRGMv2_3873_45_7
Type: pfam
Location: 7010 - 7876 (-)
Gene ID: HRGMv2_3873_45_8
Type: CAZyme
Location: 8122 - 8931 (+)
Gene ID: HRGMv2_3873_45_9
Type: pfam
Location: 8934 - 10349 (+)
Gene ID: HRGMv2_3873_45_10
Type: pfam
Location: 10352 - 11446 (+)
Gene ID: HRGMv2_3873_45_11
Type: TC
Location: 11629 - 13245 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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