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Cluster: HRGMv2_3869_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3869_28 HRGMv2_3869_28_9 11702 13354 + 3.A.1.121.4
CAZyme HRGMv2_3869_28 HRGMv2_3869_28_10 13453 15507 + GH29
pfam HRGMv2_3869_28 HRGMv2_3869_28_11 15587 17536 - AhpC-TSA | Redoxin | Thioredoxin_8
TC HRGMv2_3869_28 HRGMv2_3869_28_12 17579 18925 - 2.A.6.2.18
TC HRGMv2_3869_28 HRGMv2_3869_28_13 18937 22053 - 2.A.6.2.25
TC HRGMv2_3869_28 HRGMv2_3869_28_14 22118 23212 - 2.A.6.2.29
TC HRGMv2_3869_28 HRGMv2_3869_28_15 23456 24823 + 2.A.6.2.11
TC HRGMv2_3869_28 HRGMv2_3869_28_16 24878 26029 + 2.A.6.2.47
TC HRGMv2_3869_28 HRGMv2_3869_28_17 26042 29224 + 2.A.6.2.16
Gene ID: HRGMv2_3869_28_9
Type: TC
Location: 11702 - 13354 (+)
Gene ID: HRGMv2_3869_28_10
Type: CAZyme
Location: 13453 - 15507 (+)
Gene ID: HRGMv2_3869_28_11
Type: pfam
Location: 15587 - 17536 (-)
Gene ID: HRGMv2_3869_28_12
Type: TC
Location: 17579 - 18925 (-)
Gene ID: HRGMv2_3869_28_13
Type: TC
Location: 18937 - 22053 (-)
Gene ID: HRGMv2_3869_28_14
Type: TC
Location: 22118 - 23212 (-)
Gene ID: HRGMv2_3869_28_15
Type: TC
Location: 23456 - 24823 (+)
Gene ID: HRGMv2_3869_28_16
Type: TC
Location: 24878 - 26029 (+)
Gene ID: HRGMv2_3869_28_17
Type: TC
Location: 26042 - 29224 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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