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Cluster: HRGMv2_3869_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3869_12 HRGMv2_3869_12_5 5782 9015 + 1.B.14.6.2
TC HRGMv2_3869_12 HRGMv2_3869_12_6 9028 10497 + 8.A.46.1.4
pfam HRGMv2_3869_12 HRGMv2_3869_12_7 10509 12134 + Fasciclin
pfam HRGMv2_3869_12 HRGMv2_3869_12_8 12172 13680 + Fasciclin
TC HRGMv2_3869_12 HRGMv2_3869_12_9 13692 16793 + 1.B.14.6.13
pfam HRGMv2_3869_12 HRGMv2_3869_12_10 16814 18388 + SusD_RagB
NULL(UNKNOWN) HRGMv2_3869_12 HRGMv2_3869_12_11 18402 19829 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3869_12 HRGMv2_3869_12_12 19928 22810 + CBM32
CAZyme HRGMv2_3869_12 HRGMv2_3869_12_13 23325 25871 - GH116
Gene ID: HRGMv2_3869_12_5
Type: TC
Location: 5782 - 9015 (+)
Gene ID: HRGMv2_3869_12_6
Type: TC
Location: 9028 - 10497 (+)
Gene ID: HRGMv2_3869_12_7
Type: pfam
Location: 10509 - 12134 (+)
Gene ID: HRGMv2_3869_12_8
Type: pfam
Location: 12172 - 13680 (+)
Gene ID: HRGMv2_3869_12_9
Type: TC
Location: 13692 - 16793 (+)
Gene ID: HRGMv2_3869_12_10
Type: pfam
Location: 16814 - 18388 (+)
Gene ID: HRGMv2_3869_12_11
Type:
Location: 18402 - 19829 (+)
Gene ID: HRGMv2_3869_12_12
Type: CAZyme
Location: 19928 - 22810 (+)
Gene ID: HRGMv2_3869_12_13
Type: CAZyme
Location: 23325 - 25871 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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