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Cluster: HRGMv2_3869_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3869_1 HRGMv2_3869_1_140 173341 175716 - GH3
NULL(UNKNOWN) HRGMv2_3869_1 HRGMv2_3869_1_141 175834 176022 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3869_1 HRGMv2_3869_1_142 176080 179022 - SNF2-rel_dom | Helicase_C
CAZyme HRGMv2_3869_1 HRGMv2_3869_1_143 179145 180812 - GH13_31
CAZyme HRGMv2_3869_1 HRGMv2_3869_1_144 180853 182286 - GH13_5
TC HRGMv2_3869_1 HRGMv2_3869_1_145 182604 183758 + 2.A.1.36.1
pfam HRGMv2_3869_1 HRGMv2_3869_1_146 183790 184338 - Macro
TC HRGMv2_3869_1 HRGMv2_3869_1_147 184340 185650 - 2.A.66.1.4
Gene ID: HRGMv2_3869_1_140
Type: CAZyme
Location: 173341 - 175716 (-)
Gene ID: HRGMv2_3869_1_141
Type:
Location: 175834 - 176022 (+)
Gene ID: HRGMv2_3869_1_142
Type: pfam
Location: 176080 - 179022 (-)
Gene ID: HRGMv2_3869_1_143
Type: CAZyme
Location: 179145 - 180812 (-)
Gene ID: HRGMv2_3869_1_144
Type: CAZyme
Location: 180853 - 182286 (-)
Gene ID: HRGMv2_3869_1_145
Type: TC
Location: 182604 - 183758 (+)
Gene ID: HRGMv2_3869_1_146
Type: pfam
Location: 183790 - 184338 (-)
Gene ID: HRGMv2_3869_1_147
Type: TC
Location: 184340 - 185650 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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