Cluster: HRGMv2_3866_CGC12
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 22
- Substrate: arabinogalactan/pectin
- Genome ID: HRGMv2_3866
- CGC Family ID: CGCFAM_00212
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_2 | 1908 | 4070 | - | GH139 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_3 | 4183 | 5601 | - | CE20 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_4 | 5638 | 8958 | - | GH142 | GH143 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_5 | 8986 | 9927 | - | GH43_18 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_6 | 9975 | 13055 | - | PL29 |
| pfam | HRGMv2_3866_4 | HRGMv2_3866_4_7 | 13072 | 13719 | - | DUF3826 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_8 | 13911 | 15602 | - | PL1_2 |
| pfam | HRGMv2_3866_4 | HRGMv2_3866_4_9 | 15643 | 17610 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3866_4 | HRGMv2_3866_4_10 | 17642 | 21028 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_11 | 21403 | 24021 | + | GH2 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_12 | 24132 | 25715 | + | GH28 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_13 | 25722 | 27134 | + | CE19 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_14 | 27137 | 29590 | + | GH95 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_15 | 29605 | 30825 | + | GH105 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_16 | 30830 | 32278 | + | GH140 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_17 | 32275 | 36894 | + | CBM67 | GH33 | GH78 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_18 | 36917 | 38749 | + | GH141 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_19 | 38778 | 41450 | + | GH138 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_20 | 41560 | 45924 | + | CBM57 | CBM97 | GH137 | GH2 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_21 | 45937 | 49215 | + | GH2 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_22 | 49212 | 52073 | + | GH2 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_23 | 52087 | 55452 | + | GH106 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_24 | 55528 | 58227 | + | CBM67 | GH78 |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_25 | 58292 | 60451 | - | GH78 |
| TC | HRGMv2_3866_4 | HRGMv2_3866_4_26 | 60557 | 61924 | - | 2.A.1.1.74 |
| TF | HRGMv2_3866_4 | HRGMv2_3866_4_27 | 61965 | 62948 | - | GntR |
| CAZyme | HRGMv2_3866_4 | HRGMv2_3866_4_28 | 63169 | 65196 | + | GH127 |
Gene ID: HRGMv2_3866_4_2
Type: CAZyme
Location: 1908 - 4070 (-)
Type: CAZyme
Location: 1908 - 4070 (-)
Gene ID: HRGMv2_3866_4_3
Type: CAZyme
Location: 4183 - 5601 (-)
Type: CAZyme
Location: 4183 - 5601 (-)
Gene ID: HRGMv2_3866_4_4
Type: CAZyme
Location: 5638 - 8958 (-)
Type: CAZyme
Location: 5638 - 8958 (-)
Gene ID: HRGMv2_3866_4_5
Type: CAZyme
Location: 8986 - 9927 (-)
Type: CAZyme
Location: 8986 - 9927 (-)
Gene ID: HRGMv2_3866_4_6
Type: CAZyme
Location: 9975 - 13055 (-)
Type: CAZyme
Location: 9975 - 13055 (-)
Gene ID: HRGMv2_3866_4_7
Type: pfam
Location: 13072 - 13719 (-)
Type: pfam
Location: 13072 - 13719 (-)
Gene ID: HRGMv2_3866_4_8
Type: CAZyme
Location: 13911 - 15602 (-)
Type: CAZyme
Location: 13911 - 15602 (-)
Gene ID: HRGMv2_3866_4_9
Type: pfam
Location: 15643 - 17610 (-)
Type: pfam
Location: 15643 - 17610 (-)
Gene ID: HRGMv2_3866_4_10
Type: TC
Location: 17642 - 21028 (-)
Type: TC
Location: 17642 - 21028 (-)
Gene ID: HRGMv2_3866_4_11
Type: CAZyme
Location: 21403 - 24021 (+)
Type: CAZyme
Location: 21403 - 24021 (+)
Gene ID: HRGMv2_3866_4_12
Type: CAZyme
Location: 24132 - 25715 (+)
Type: CAZyme
Location: 24132 - 25715 (+)
Gene ID: HRGMv2_3866_4_13
Type: CAZyme
Location: 25722 - 27134 (+)
Type: CAZyme
Location: 25722 - 27134 (+)
Gene ID: HRGMv2_3866_4_14
Type: CAZyme
Location: 27137 - 29590 (+)
Type: CAZyme
Location: 27137 - 29590 (+)
Gene ID: HRGMv2_3866_4_15
Type: CAZyme
Location: 29605 - 30825 (+)
Type: CAZyme
Location: 29605 - 30825 (+)
Gene ID: HRGMv2_3866_4_16
Type: CAZyme
Location: 30830 - 32278 (+)
Type: CAZyme
Location: 30830 - 32278 (+)
Gene ID: HRGMv2_3866_4_17
Type: CAZyme
Location: 32275 - 36894 (+)
Type: CAZyme
Location: 32275 - 36894 (+)
Gene ID: HRGMv2_3866_4_18
Type: CAZyme
Location: 36917 - 38749 (+)
Type: CAZyme
Location: 36917 - 38749 (+)
Gene ID: HRGMv2_3866_4_19
Type: CAZyme
Location: 38778 - 41450 (+)
Type: CAZyme
Location: 38778 - 41450 (+)
Gene ID: HRGMv2_3866_4_20
Type: CAZyme
Location: 41560 - 45924 (+)
Type: CAZyme
Location: 41560 - 45924 (+)
Gene ID: HRGMv2_3866_4_21
Type: CAZyme
Location: 45937 - 49215 (+)
Type: CAZyme
Location: 45937 - 49215 (+)
Gene ID: HRGMv2_3866_4_22
Type: CAZyme
Location: 49212 - 52073 (+)
Type: CAZyme
Location: 49212 - 52073 (+)
Gene ID: HRGMv2_3866_4_23
Type: CAZyme
Location: 52087 - 55452 (+)
Type: CAZyme
Location: 52087 - 55452 (+)
Gene ID: HRGMv2_3866_4_24
Type: CAZyme
Location: 55528 - 58227 (+)
Type: CAZyme
Location: 55528 - 58227 (+)
Gene ID: HRGMv2_3866_4_25
Type: CAZyme
Location: 58292 - 60451 (-)
Type: CAZyme
Location: 58292 - 60451 (-)
Gene ID: HRGMv2_3866_4_26
Type: TC
Location: 60557 - 61924 (-)
Type: TC
Location: 60557 - 61924 (-)
Gene ID: HRGMv2_3866_4_27
Type: TF
Location: 61965 - 62948 (-)
Type: TF
Location: 61965 - 62948 (-)
Gene ID: HRGMv2_3866_4_28
Type: CAZyme
Location: 63169 - 65196 (+)
Type: CAZyme
Location: 63169 - 65196 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Dysgonomonadaceae
Genus
Dysgonomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.