dbCAN Logo

Cluster: HRGMv2_3865_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3865_2 HRGMv2_3865_2_17 24167 27535 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_3865_2 HRGMv2_3865_2_18 27658 28638 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_3865_2 HRGMv2_3865_2_19 29136 30011 + FecR
TC HRGMv2_3865_2 HRGMv2_3865_2_20 30140 33454 + 1.B.14.6.13
TC HRGMv2_3865_2 HRGMv2_3865_2_21 33473 35038 + 8.A.46.2.2
pfam HRGMv2_3865_2 HRGMv2_3865_2_22 35096 36139 + GH18_BT1044-like
pfam HRGMv2_3865_2 HRGMv2_3865_2_23 36146 37285 + Pentaxin | BT_3987-like_N | Laminin_G_3
CAZyme HRGMv2_3865_2 HRGMv2_3865_2_24 37317 38708 + GH18
Gene ID: HRGMv2_3865_2_17
Type: TC
Location: 24167 - 27535 (-)
Gene ID: HRGMv2_3865_2_18
Type:
Location: 27658 - 28638 (-)
Gene ID: HRGMv2_3865_2_19
Type: STP
Location: 29136 - 30011 (+)
Gene ID: HRGMv2_3865_2_20
Type: TC
Location: 30140 - 33454 (+)
Gene ID: HRGMv2_3865_2_21
Type: TC
Location: 33473 - 35038 (+)
Gene ID: HRGMv2_3865_2_22
Type: pfam
Location: 35096 - 36139 (+)
Gene ID: HRGMv2_3865_2_23
Type: pfam
Location: 36146 - 37285 (+)
Gene ID: HRGMv2_3865_2_24
Type: CAZyme
Location: 37317 - 38708 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List