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Cluster: HRGMv2_3865_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3865_1 HRGMv2_3865_1_14 21413 24751 + 1.B.14.6.1
TC HRGMv2_3865_1 HRGMv2_3865_1_15 24762 26477 + 8.A.46.1.3
pfam HRGMv2_3865_1 HRGMv2_3865_1_16 26464 28371 + FAD_binding_2 | GIDA | Pyr_redox_2 | FAD_oxidored | NAD_binding_8
CAZyme HRGMv2_3865_1 HRGMv2_3865_1_17 28407 30002 + GH20
pfam HRGMv2_3865_1 HRGMv2_3865_1_18 30007 31038 + Exo_endo_phos
NULL(UNKNOWN) HRGMv2_3865_1 HRGMv2_3865_1_19 31295 31453 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3865_1 HRGMv2_3865_1_20 31470 32927 + 9.B.174.1.1
peptidase HRGMv2_3865_1 HRGMv2_3865_1_21 33056 34072 + C01.UPA
pfam HRGMv2_3865_1 HRGMv2_3865_1_22 34204 34896 + His_Phos_1
TC HRGMv2_3865_1 HRGMv2_3865_1_23 35625 38834 + 1.B.14.6.1
TC HRGMv2_3865_1 HRGMv2_3865_1_24 38851 40449 + 8.A.46.1.3
Gene ID: HRGMv2_3865_1_14
Type: TC
Location: 21413 - 24751 (+)
Gene ID: HRGMv2_3865_1_15
Type: TC
Location: 24762 - 26477 (+)
Gene ID: HRGMv2_3865_1_16
Type: pfam
Location: 26464 - 28371 (+)
Gene ID: HRGMv2_3865_1_17
Type: CAZyme
Location: 28407 - 30002 (+)
Gene ID: HRGMv2_3865_1_18
Type: pfam
Location: 30007 - 31038 (+)
Gene ID: HRGMv2_3865_1_19
Type:
Location: 31295 - 31453 (+)
Gene ID: HRGMv2_3865_1_20
Type: TC
Location: 31470 - 32927 (+)
Gene ID: HRGMv2_3865_1_21
Type: peptidase
Location: 33056 - 34072 (+)
Gene ID: HRGMv2_3865_1_22
Type: pfam
Location: 34204 - 34896 (+)
Gene ID: HRGMv2_3865_1_23
Type: TC
Location: 35625 - 38834 (+)
Gene ID: HRGMv2_3865_1_24
Type: TC
Location: 38851 - 40449 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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