Cluster: HRGMv2_3862_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3862
- CGC Family ID: CGCFAM_01541
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3862_2 | HRGMv2_3862_2_229 | 295467 | 297272 | + | GH2 |
| TC | HRGMv2_3862_2 | HRGMv2_3862_2_230 | 297322 | 300507 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3862_2 | HRGMv2_3862_2_231 | 300556 | 302355 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_3862_2 | HRGMv2_3862_2_232 | 302437 | 303675 | + | BT_3987-like_N |
| CAZyme | HRGMv2_3862_2 | HRGMv2_3862_2_233 | 303692 | 305902 | + | GH89 |
| STP | HRGMv2_3862_2 | HRGMv2_3862_2_234 | 305945 | 306766 | + | SIS |
| CAZyme | HRGMv2_3862_2 | HRGMv2_3862_2_235 | 306720 | 308675 | + | GH20 |
Gene ID: HRGMv2_3862_2_229
Type: CAZyme
Location: 295467 - 297272 (+)
Type: CAZyme
Location: 295467 - 297272 (+)
Gene ID: HRGMv2_3862_2_230
Type: TC
Location: 297322 - 300507 (+)
Type: TC
Location: 297322 - 300507 (+)
Gene ID: HRGMv2_3862_2_231
Type: pfam
Location: 300556 - 302355 (+)
Type: pfam
Location: 300556 - 302355 (+)
Gene ID: HRGMv2_3862_2_232
Type: pfam
Location: 302437 - 303675 (+)
Type: pfam
Location: 302437 - 303675 (+)
Gene ID: HRGMv2_3862_2_233
Type: CAZyme
Location: 303692 - 305902 (+)
Type: CAZyme
Location: 303692 - 305902 (+)
Gene ID: HRGMv2_3862_2_234
Type: STP
Location: 305945 - 306766 (+)
Type: STP
Location: 305945 - 306766 (+)
Gene ID: HRGMv2_3862_2_235
Type: CAZyme
Location: 306720 - 308675 (+)
Type: CAZyme
Location: 306720 - 308675 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Marinifilaceae
Genus
Odoribacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.