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Cluster: HRGMv2_3862_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3862_1 HRGMv2_3862_1_11 12470 13762 + GT2
pfam HRGMv2_3862_1 HRGMv2_3862_1_12 14187 15119 + ATPgrasp_TupA
CAZyme HRGMv2_3862_1 HRGMv2_3862_1_13 15141 16253 + GT4
TC HRGMv2_3862_1 HRGMv2_3862_1_14 16250 17305 + 9.B.18.2.1
pfam HRGMv2_3862_1 HRGMv2_3862_1_15 18403 19278 + Epimerase | RmlD_sub_bind
CAZyme HRGMv2_3862_1 HRGMv2_3862_1_16 19265 20458 + GT4
pfam HRGMv2_3862_1 HRGMv2_3862_1_17 20462 20902 + FdtA
pfam HRGMv2_3862_1 HRGMv2_3862_1_18 21291 22496 - Phage_integrase | Phage_int_SAM_5
CAZyme HRGMv2_3862_1 HRGMv2_3862_1_19 23014 25002 + GH97
Gene ID: HRGMv2_3862_1_11
Type: CAZyme
Location: 12470 - 13762 (+)
Gene ID: HRGMv2_3862_1_12
Type: pfam
Location: 14187 - 15119 (+)
Gene ID: HRGMv2_3862_1_13
Type: CAZyme
Location: 15141 - 16253 (+)
Gene ID: HRGMv2_3862_1_14
Type: TC
Location: 16250 - 17305 (+)
Gene ID: HRGMv2_3862_1_15
Type: pfam
Location: 18403 - 19278 (+)
Gene ID: HRGMv2_3862_1_16
Type: CAZyme
Location: 19265 - 20458 (+)
Gene ID: HRGMv2_3862_1_17
Type: pfam
Location: 20462 - 20902 (+)
Gene ID: HRGMv2_3862_1_18
Type: pfam
Location: 21291 - 22496 (-)
Gene ID: HRGMv2_3862_1_19
Type: CAZyme
Location: 23014 - 25002 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Marinifilaceae
→
Genus
Odoribacter
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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