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Cluster: HRGMv2_3860_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3860_10 HRGMv2_3860_10_17 21873 22799 - GT2
STP HRGMv2_3860_10 HRGMv2_3860_10_18 22807 24051 - SpoIIE
CAZyme HRGMv2_3860_10 HRGMv2_3860_10_19 24257 25867 + GT83
pfam HRGMv2_3860_10 HRGMv2_3860_10_20 25869 26183 - DUF4491
pfam HRGMv2_3860_10 HRGMv2_3860_10_21 26441 27541 - GldN
TC HRGMv2_3860_10 HRGMv2_3860_10_22 27558 29123 - 9.A.25.1.1
TC HRGMv2_3860_10 HRGMv2_3860_10_23 29136 30074 - 9.A.25.1.1
TC HRGMv2_3860_10 HRGMv2_3860_10_24 30114 31556 - 9.A.25.1.1
pfam HRGMv2_3860_10 HRGMv2_3860_10_25 31577 32536 - PorP_SprF
TC HRGMv2_3860_10 HRGMv2_3860_10_26 32568 33290 - 1.B.44.1.2
pfam HRGMv2_3860_10 HRGMv2_3860_10_27 33396 34493 + YhcG_C | DUF1016_N
TC HRGMv2_3860_10 HRGMv2_3860_10_28 34480 35607 + 3.A.1.13.2
TC HRGMv2_3860_10 HRGMv2_3860_10_29 35604 36623 + 3.A.1.13.2
TC HRGMv2_3860_10 HRGMv2_3860_10_30 36623 36982 + 3.A.1.14.8
Gene ID: HRGMv2_3860_10_17
Type: CAZyme
Location: 21873 - 22799 (-)
Gene ID: HRGMv2_3860_10_18
Type: STP
Location: 22807 - 24051 (-)
Gene ID: HRGMv2_3860_10_19
Type: CAZyme
Location: 24257 - 25867 (+)
Gene ID: HRGMv2_3860_10_20
Type: pfam
Location: 25869 - 26183 (-)
Gene ID: HRGMv2_3860_10_21
Type: pfam
Location: 26441 - 27541 (-)
Gene ID: HRGMv2_3860_10_22
Type: TC
Location: 27558 - 29123 (-)
Gene ID: HRGMv2_3860_10_23
Type: TC
Location: 29136 - 30074 (-)
Gene ID: HRGMv2_3860_10_24
Type: TC
Location: 30114 - 31556 (-)
Gene ID: HRGMv2_3860_10_25
Type: pfam
Location: 31577 - 32536 (-)
Gene ID: HRGMv2_3860_10_26
Type: TC
Location: 32568 - 33290 (-)
Gene ID: HRGMv2_3860_10_27
Type: pfam
Location: 33396 - 34493 (+)
Gene ID: HRGMv2_3860_10_28
Type: TC
Location: 34480 - 35607 (+)
Gene ID: HRGMv2_3860_10_29
Type: TC
Location: 35604 - 36623 (+)
Gene ID: HRGMv2_3860_10_30
Type: TC
Location: 36623 - 36982 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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