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Cluster: HRGMv2_3859_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3859_7 HRGMv2_3859_7_8 8227 11517 - GH2
TF HRGMv2_3859_7 HRGMv2_3859_7_9 11632 15111 - HTH_AraC
pfam HRGMv2_3859_7 HRGMv2_3859_7_10 15545 17554 - SusD_RagB | SusD-like_3
TC HRGMv2_3859_7 HRGMv2_3859_7_11 17593 20790 - 1.B.14.6.1
TC HRGMv2_3859_7 HRGMv2_3859_7_12 21997 24969 + 1.B.14.6.1
TC HRGMv2_3859_7 HRGMv2_3859_7_13 25161 26735 + 8.A.46.1.1
pfam HRGMv2_3859_7 HRGMv2_3859_7_14 26835 28238 + SusE | DUF5111 | DUF5114
CAZyme HRGMv2_3859_7 HRGMv2_3859_7_15 28458 29513 + GH53
CAZyme HRGMv2_3859_7 HRGMv2_3859_7_16 29597 30703 + GH53
CAZyme HRGMv2_3859_7 HRGMv2_3859_7_17 30726 32354 + GH2
Gene ID: HRGMv2_3859_7_8
Type: CAZyme
Location: 8227 - 11517 (-)
Gene ID: HRGMv2_3859_7_9
Type: TF
Location: 11632 - 15111 (-)
Gene ID: HRGMv2_3859_7_10
Type: pfam
Location: 15545 - 17554 (-)
Gene ID: HRGMv2_3859_7_11
Type: TC
Location: 17593 - 20790 (-)
Gene ID: HRGMv2_3859_7_12
Type: TC
Location: 21997 - 24969 (+)
Gene ID: HRGMv2_3859_7_13
Type: TC
Location: 25161 - 26735 (+)
Gene ID: HRGMv2_3859_7_14
Type: pfam
Location: 26835 - 28238 (+)
Gene ID: HRGMv2_3859_7_15
Type: CAZyme
Location: 28458 - 29513 (+)
Gene ID: HRGMv2_3859_7_16
Type: CAZyme
Location: 29597 - 30703 (+)
Gene ID: HRGMv2_3859_7_17
Type: CAZyme
Location: 30726 - 32354 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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