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Cluster: HRGMv2_3859_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3859_2 HRGMv2_3859_2_5 4927 7680 + GH77
CAZyme HRGMv2_3859_2 HRGMv2_3859_2_6 7794 9716 + GH13_14
CAZyme HRGMv2_3859_2 HRGMv2_3859_2_7 9750 11711 + GH13_46
CAZyme HRGMv2_3859_2 HRGMv2_3859_2_8 11765 13813 + GH13_6
pfam HRGMv2_3859_2 HRGMv2_3859_2_9 14049 14960 + PorP_SprF
TC HRGMv2_3859_2 HRGMv2_3859_2_10 15017 16477 + 9.A.25.1.1
pfam HRGMv2_3859_2 HRGMv2_3859_2_11 16492 17310 + GldL_N
TC HRGMv2_3859_2 HRGMv2_3859_2_12 17311 18855 + 9.A.25.1.1
Gene ID: HRGMv2_3859_2_5
Type: CAZyme
Location: 4927 - 7680 (+)
Gene ID: HRGMv2_3859_2_6
Type: CAZyme
Location: 7794 - 9716 (+)
Gene ID: HRGMv2_3859_2_7
Type: CAZyme
Location: 9750 - 11711 (+)
Gene ID: HRGMv2_3859_2_8
Type: CAZyme
Location: 11765 - 13813 (+)
Gene ID: HRGMv2_3859_2_9
Type: pfam
Location: 14049 - 14960 (+)
Gene ID: HRGMv2_3859_2_10
Type: TC
Location: 15017 - 16477 (+)
Gene ID: HRGMv2_3859_2_11
Type: pfam
Location: 16492 - 17310 (+)
Gene ID: HRGMv2_3859_2_12
Type: TC
Location: 17311 - 18855 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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