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Cluster: HRGMv2_3859_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3859_58 HRGMv2_3859_58_4 2109 3728 + GH20
NULL(UNKNOWN) HRGMv2_3859_58 HRGMv2_3859_58_5 3859 4305 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3859_58 HRGMv2_3859_58_6 4472 4885 + RseC_MucC
TC HRGMv2_3859_58 HRGMv2_3859_58_7 4919 5803 + 3.D.6.1.3
TC HRGMv2_3859_58 HRGMv2_3859_58_8 5824 7167 + 3.D.6.1.2
TC HRGMv2_3859_58 HRGMv2_3859_58_9 7293 8288 + 3.D.6.1.2
pfam HRGMv2_3859_58 HRGMv2_3859_58_10 8285 8857 + FMN_bind
TC HRGMv2_3859_58 HRGMv2_3859_58_11 8871 9452 + 3.D.6.1.2
TC HRGMv2_3859_58 HRGMv2_3859_58_12 9457 10056 + 3.D.6.1.2
Gene ID: HRGMv2_3859_58_4
Type: CAZyme
Location: 2109 - 3728 (+)
Gene ID: HRGMv2_3859_58_5
Type:
Location: 3859 - 4305 (-)
Gene ID: HRGMv2_3859_58_6
Type: pfam
Location: 4472 - 4885 (+)
Gene ID: HRGMv2_3859_58_7
Type: TC
Location: 4919 - 5803 (+)
Gene ID: HRGMv2_3859_58_8
Type: TC
Location: 5824 - 7167 (+)
Gene ID: HRGMv2_3859_58_9
Type: TC
Location: 7293 - 8288 (+)
Gene ID: HRGMv2_3859_58_10
Type: pfam
Location: 8285 - 8857 (+)
Gene ID: HRGMv2_3859_58_11
Type: TC
Location: 8871 - 9452 (+)
Gene ID: HRGMv2_3859_58_12
Type: TC
Location: 9457 - 10056 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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