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Cluster: HRGMv2_3859_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3859_20 HRGMv2_3859_20_6 6990 10196 + 1.B.14.6.1
pfam HRGMv2_3859_20 HRGMv2_3859_20_7 10229 11983 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_3859_20 HRGMv2_3859_20_8 12085 13812 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3859_20 HRGMv2_3859_20_9 13892 16582 + GH43_4
CAZyme HRGMv2_3859_20 HRGMv2_3859_20_10 16658 17683 + GH43_5
CAZyme HRGMv2_3859_20 HRGMv2_3859_20_11 17795 20233 + GH51_2
NULL(UNKNOWN) HRGMv2_3859_20 HRGMv2_3859_20_12 20600 20782 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3859_20 HRGMv2_3859_20_13 20768 21319 - Metallophos | Metallophos_2
TC HRGMv2_3859_20 HRGMv2_3859_20_14 21389 22213 - 1.B.42.1.2
TC HRGMv2_3859_20 HRGMv2_3859_20_15 22462 23208 + 3.A.1.27.1
TC HRGMv2_3859_20 HRGMv2_3859_20_16 23228 24004 + 3.A.1.27.4
Gene ID: HRGMv2_3859_20_6
Type: TC
Location: 6990 - 10196 (+)
Gene ID: HRGMv2_3859_20_7
Type: pfam
Location: 10229 - 11983 (+)
Gene ID: HRGMv2_3859_20_8
Type:
Location: 12085 - 13812 (+)
Gene ID: HRGMv2_3859_20_9
Type: CAZyme
Location: 13892 - 16582 (+)
Gene ID: HRGMv2_3859_20_10
Type: CAZyme
Location: 16658 - 17683 (+)
Gene ID: HRGMv2_3859_20_11
Type: CAZyme
Location: 17795 - 20233 (+)
Gene ID: HRGMv2_3859_20_12
Type:
Location: 20600 - 20782 (+)
Gene ID: HRGMv2_3859_20_13
Type: pfam
Location: 20768 - 21319 (-)
Gene ID: HRGMv2_3859_20_14
Type: TC
Location: 21389 - 22213 (-)
Gene ID: HRGMv2_3859_20_15
Type: TC
Location: 22462 - 23208 (+)
Gene ID: HRGMv2_3859_20_16
Type: TC
Location: 23228 - 24004 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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