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Cluster: HRGMv2_3834_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3834_29 HRGMv2_3834_29_3 2752 3570 - 3.A.1.5.39
TC HRGMv2_3834_29 HRGMv2_3834_29_4 3557 4450 - 3.A.1.5.23
TC HRGMv2_3834_29 HRGMv2_3834_29_5 4447 5364 - 3.A.1.5.11
TC HRGMv2_3834_29 HRGMv2_3834_29_6 5361 6332 - 3.A.1.5.38
TC HRGMv2_3834_29 HRGMv2_3834_29_7 6338 8005 - 3.A.1.5.39
pfam HRGMv2_3834_29 HRGMv2_3834_29_8 8347 9117 + Pan_kinase
STP HRGMv2_3834_29 HRGMv2_3834_29_9 9160 10548 - SBP_bac_1
CAZyme HRGMv2_3834_29 HRGMv2_3834_29_10 10789 12759 - GH42
Gene ID: HRGMv2_3834_29_3
Type: TC
Location: 2752 - 3570 (-)
Gene ID: HRGMv2_3834_29_4
Type: TC
Location: 3557 - 4450 (-)
Gene ID: HRGMv2_3834_29_5
Type: TC
Location: 4447 - 5364 (-)
Gene ID: HRGMv2_3834_29_6
Type: TC
Location: 5361 - 6332 (-)
Gene ID: HRGMv2_3834_29_7
Type: TC
Location: 6338 - 8005 (-)
Gene ID: HRGMv2_3834_29_8
Type: pfam
Location: 8347 - 9117 (+)
Gene ID: HRGMv2_3834_29_9
Type: STP
Location: 9160 - 10548 (-)
Gene ID: HRGMv2_3834_29_10
Type: CAZyme
Location: 10789 - 12759 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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