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Cluster: HRGMv2_3834_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3834_20 HRGMv2_3834_20_3 2905 5328 - GT20 | GT20
CAZyme HRGMv2_3834_20 HRGMv2_3834_20_4 5418 7304 - GH13_31
TC HRGMv2_3834_20 HRGMv2_3834_20_5 7437 8315 - 3.A.1.1.28
TC HRGMv2_3834_20 HRGMv2_3834_20_6 8333 9271 - 3.A.1.1.28
TC HRGMv2_3834_20 HRGMv2_3834_20_7 9292 10584 - 3.A.1.1.44
pfam HRGMv2_3834_20 HRGMv2_3834_20_8 10733 11944 + ROK
CAZyme HRGMv2_3834_20 HRGMv2_3834_20_9 11992 14232 - GH36
pfam HRGMv2_3834_20 HRGMv2_3834_20_10 14450 14938 - dCMP_cyt_deam_1 | MafB19-deam
TC HRGMv2_3834_20 HRGMv2_3834_20_11 15056 17137 + 2.A.36.6.1
Gene ID: HRGMv2_3834_20_3
Type: CAZyme
Location: 2905 - 5328 (-)
Gene ID: HRGMv2_3834_20_4
Type: CAZyme
Location: 5418 - 7304 (-)
Gene ID: HRGMv2_3834_20_5
Type: TC
Location: 7437 - 8315 (-)
Gene ID: HRGMv2_3834_20_6
Type: TC
Location: 8333 - 9271 (-)
Gene ID: HRGMv2_3834_20_7
Type: TC
Location: 9292 - 10584 (-)
Gene ID: HRGMv2_3834_20_8
Type: pfam
Location: 10733 - 11944 (+)
Gene ID: HRGMv2_3834_20_9
Type: CAZyme
Location: 11992 - 14232 (-)
Gene ID: HRGMv2_3834_20_10
Type: pfam
Location: 14450 - 14938 (-)
Gene ID: HRGMv2_3834_20_11
Type: TC
Location: 15056 - 17137 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3834_20_5 vegan > omnivore 1.19367 0.01047
HRGMv2_3834_20_5 vegetarian > omnivore 1.19700 0.00855
HRGMv2_3834_20_6 vegan > omnivore 1.31095 0.01047

🧭 Explore Read Mapping of CGC

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