Cluster: HRGMv2_3834_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3834
- CGC Family ID: CGCFAM_06404
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3834_10 | HRGMv2_3834_10_6 | 3989 | 5311 | + | 3.A.1.1.45 |
| TC | HRGMv2_3834_10 | HRGMv2_3834_10_7 | 5487 | 6116 | - | 9.B.28.1.3 |
| CAZyme | HRGMv2_3834_10 | HRGMv2_3834_10_8 | 6378 | 8153 | + | GH13_30 |
| TF | HRGMv2_3834_10 | HRGMv2_3834_10_9 | 8193 | 9212 | - | LacI |
| TC | HRGMv2_3834_10 | HRGMv2_3834_10_10 | 9569 | 11467 | + | 1.A.33.1.4 |
Gene ID: HRGMv2_3834_10_6
Type: TC
Location: 3989 - 5311 (+)
Type: TC
Location: 3989 - 5311 (+)
Gene ID: HRGMv2_3834_10_7
Type: TC
Location: 5487 - 6116 (-)
Type: TC
Location: 5487 - 6116 (-)
Gene ID: HRGMv2_3834_10_8
Type: CAZyme
Location: 6378 - 8153 (+)
Type: CAZyme
Location: 6378 - 8153 (+)
Gene ID: HRGMv2_3834_10_9
Type: TF
Location: 8193 - 9212 (-)
Type: TF
Location: 8193 - 9212 (-)
Gene ID: HRGMv2_3834_10_10
Type: TC
Location: 9569 - 11467 (+)
Type: TC
Location: 9569 - 11467 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium mongoliense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.