Cluster: HRGMv2_3834_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3834
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3834_1 | HRGMv2_3834_1_1 | 2 | 2278 | + | GH94 |
| CAZyme | HRGMv2_3834_1 | HRGMv2_3834_1_2 | 2291 | 4477 | + | GH3 |
| pfam | HRGMv2_3834_1 | HRGMv2_3834_1_3 | 4699 | 5178 | - | Ferritin |
| TC | HRGMv2_3834_1 | HRGMv2_3834_1_4 | 5364 | 6938 | - | 9.A.40.2.1 |
| sulfatase | HRGMv2_3834_1 | HRGMv2_3834_1_5 | 7021 | 7698 | - | S1_7 |
| pfam | HRGMv2_3834_1 | HRGMv2_3834_1_6 | 7885 | 10641 | - | PEPcase | PEPcase | PEPcase_2 |
| TC | HRGMv2_3834_1 | HRGMv2_3834_1_7 | 11131 | 12861 | + | 2.A.79.1.3 |
Gene ID: HRGMv2_3834_1_1
Type: CAZyme
Location: 2 - 2278 (+)
Type: CAZyme
Location: 2 - 2278 (+)
Gene ID: HRGMv2_3834_1_2
Type: CAZyme
Location: 2291 - 4477 (+)
Type: CAZyme
Location: 2291 - 4477 (+)
Gene ID: HRGMv2_3834_1_3
Type: pfam
Location: 4699 - 5178 (-)
Type: pfam
Location: 4699 - 5178 (-)
Gene ID: HRGMv2_3834_1_4
Type: TC
Location: 5364 - 6938 (-)
Type: TC
Location: 5364 - 6938 (-)
Gene ID: HRGMv2_3834_1_5
Type: sulfatase
Location: 7021 - 7698 (-)
Type: sulfatase
Location: 7021 - 7698 (-)
Gene ID: HRGMv2_3834_1_6
Type: pfam
Location: 7885 - 10641 (-)
Type: pfam
Location: 7885 - 10641 (-)
Gene ID: HRGMv2_3834_1_7
Type: TC
Location: 11131 - 12861 (+)
Type: TC
Location: 11131 - 12861 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium mongoliense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.