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Cluster: HRGMv2_3833_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3833_6 HRGMv2_3833_6_7 4790 6076 + 2.A.1.6.4
pfam HRGMv2_3833_6 HRGMv2_3833_6_8 6093 6587 + DNA_binding_1
TC HRGMv2_3833_6 HRGMv2_3833_6_9 6644 8413 + 2.A.15.1.10
pfam HRGMv2_3833_6 HRGMv2_3833_6_10 8501 11272 + AAA_11 | AAA_12 | AAA_19 | UvrD_C | AAA_30 | AAA_30
CAZyme HRGMv2_3833_6 HRGMv2_3833_6_11 11283 12365 + GH33
TF HRGMv2_3833_6 HRGMv2_3833_6_12 12355 12729 - DUF24
TC HRGMv2_3833_6 HRGMv2_3833_6_13 13274 14677 - 2.A.1.1.32
Gene ID: HRGMv2_3833_6_7
Type: TC
Location: 4790 - 6076 (+)
Gene ID: HRGMv2_3833_6_8
Type: pfam
Location: 6093 - 6587 (+)
Gene ID: HRGMv2_3833_6_9
Type: TC
Location: 6644 - 8413 (+)
Gene ID: HRGMv2_3833_6_10
Type: pfam
Location: 8501 - 11272 (+)
Gene ID: HRGMv2_3833_6_11
Type: CAZyme
Location: 11283 - 12365 (+)
Gene ID: HRGMv2_3833_6_12
Type: TF
Location: 12355 - 12729 (-)
Gene ID: HRGMv2_3833_6_13
Type: TC
Location: 13274 - 14677 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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