Cluster: HRGMv2_3832_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3832
- CGC Family ID: CGCFAM_00056
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3832_48 | HRGMv2_3832_48_1 | 3 | 1391 | + | 3.A.18.1.1 |
| STP | HRGMv2_3832_48 | HRGMv2_3832_48_2 | 1505 | 3091 | + | HATPase_c | HisKA |
| TF | HRGMv2_3832_48 | HRGMv2_3832_48_3 | 3107 | 3784 | + | Trans_reg_C |
| CAZyme | HRGMv2_3832_48 | HRGMv2_3832_48_4 | 3958 | 5163 | + | GT1 |
| CAZyme | HRGMv2_3832_48 | HRGMv2_3832_48_5 | 5160 | 6449 | + | GT4 |
| CAZyme | HRGMv2_3832_48 | HRGMv2_3832_48_6 | 6449 | 7663 | + | GT4 |
| TC | HRGMv2_3832_48 | HRGMv2_3832_48_7 | 7660 | 9594 | + | 3.A.1.106.3 |
Gene ID: HRGMv2_3832_48_1
Type: TC
Location: 3 - 1391 (+)
Type: TC
Location: 3 - 1391 (+)
Gene ID: HRGMv2_3832_48_2
Type: STP
Location: 1505 - 3091 (+)
Type: STP
Location: 1505 - 3091 (+)
Gene ID: HRGMv2_3832_48_3
Type: TF
Location: 3107 - 3784 (+)
Type: TF
Location: 3107 - 3784 (+)
Gene ID: HRGMv2_3832_48_4
Type: CAZyme
Location: 3958 - 5163 (+)
Type: CAZyme
Location: 3958 - 5163 (+)
Gene ID: HRGMv2_3832_48_5
Type: CAZyme
Location: 5160 - 6449 (+)
Type: CAZyme
Location: 5160 - 6449 (+)
Gene ID: HRGMv2_3832_48_6
Type: CAZyme
Location: 6449 - 7663 (+)
Type: CAZyme
Location: 6449 - 7663 (+)
Gene ID: HRGMv2_3832_48_7
Type: TC
Location: 7660 - 9594 (+)
Type: TC
Location: 7660 - 9594 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Kocuria
Species
Kocuria sp030453435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.