Cluster: HRGMv2_3832_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3832
- CGC Family ID: CGCFAM_00293
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3832_20 | HRGMv2_3832_20_6 | 5203 | 7014 | - | 9.B.102.6.5 |
| CAZyme | HRGMv2_3832_20 | HRGMv2_3832_20_7 | 7087 | 8262 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_3832_20 | HRGMv2_3832_20_8 | 8522 | 8818 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3832_20 | HRGMv2_3832_20_9 | 8886 | 10472 | - | AA3_2 |
| sulfatase | HRGMv2_3832_20 | HRGMv2_3832_20_10 | 10527 | 12020 | - | S1_6 |
| TC | HRGMv2_3832_20 | HRGMv2_3832_20_11 | 12017 | 14179 | - | 2.A.15.1.4 |
Gene ID: HRGMv2_3832_20_6
Type: TC
Location: 5203 - 7014 (-)
Type: TC
Location: 5203 - 7014 (-)
Gene ID: HRGMv2_3832_20_7
Type: CAZyme
Location: 7087 - 8262 (+)
Type: CAZyme
Location: 7087 - 8262 (+)
Gene ID: HRGMv2_3832_20_8
Type:
Location: 8522 - 8818 (+)
Type:
Location: 8522 - 8818 (+)
Gene ID: HRGMv2_3832_20_9
Type: CAZyme
Location: 8886 - 10472 (-)
Type: CAZyme
Location: 8886 - 10472 (-)
Gene ID: HRGMv2_3832_20_10
Type: sulfatase
Location: 10527 - 12020 (-)
Type: sulfatase
Location: 10527 - 12020 (-)
Gene ID: HRGMv2_3832_20_11
Type: TC
Location: 12017 - 14179 (-)
Type: TC
Location: 12017 - 14179 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Kocuria
Species
Kocuria sp030453435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.