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Cluster: HRGMv2_3832_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3832_18 HRGMv2_3832_18_12 10780 11841 + GT4
pfam HRGMv2_3832_18 HRGMv2_3832_18_13 11838 12854 + Glyco_tran_28_C
CAZyme HRGMv2_3832_18 HRGMv2_3832_18_14 12839 13672 + GT2
TF HRGMv2_3832_18 HRGMv2_3832_18_15 13701 14345 + GerE
pfam HRGMv2_3832_18 HRGMv2_3832_18_16 14398 15303 + adh_short | KR | adh_short_C2
TC HRGMv2_3832_18 HRGMv2_3832_18_17 15424 16689 + 2.A.3.3.17
TC HRGMv2_3832_18 HRGMv2_3832_18_18 16831 17145 + 2.A.7.1.4
TC HRGMv2_3832_18 HRGMv2_3832_18_19 17147 17515 + 2.A.7.1.10
Gene ID: HRGMv2_3832_18_12
Type: CAZyme
Location: 10780 - 11841 (+)
Gene ID: HRGMv2_3832_18_13
Type: pfam
Location: 11838 - 12854 (+)
Gene ID: HRGMv2_3832_18_14
Type: CAZyme
Location: 12839 - 13672 (+)
Gene ID: HRGMv2_3832_18_15
Type: TF
Location: 13701 - 14345 (+)
Gene ID: HRGMv2_3832_18_16
Type: pfam
Location: 14398 - 15303 (+)
Gene ID: HRGMv2_3832_18_17
Type: TC
Location: 15424 - 16689 (+)
Gene ID: HRGMv2_3832_18_18
Type: TC
Location: 16831 - 17145 (+)
Gene ID: HRGMv2_3832_18_19
Type: TC
Location: 17147 - 17515 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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