Cluster: HRGMv2_3832_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3832
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3832_183 | HRGMv2_3832_183_2 | 552 | 1301 | - | GT2 |
| pfam | HRGMv2_3832_183 | HRGMv2_3832_183_3 | 1396 | 1848 | - | Pyr_excise |
| TC | HRGMv2_3832_183 | HRGMv2_3832_183_4 | 1925 | 2632 | + | 9.B.27.2.5 |
| pfam | HRGMv2_3832_183 | HRGMv2_3832_183_5 | 2688 | 3083 | + | SdpI |
| STP | HRGMv2_3832_183 | HRGMv2_3832_183_6 | 3203 | 3820 | + | TetR_N |
| TC | HRGMv2_3832_183 | HRGMv2_3832_183_7 | 3837 | 5213 | - | 4.A.7.1.2 |
Gene ID: HRGMv2_3832_183_2
Type: CAZyme
Location: 552 - 1301 (-)
Type: CAZyme
Location: 552 - 1301 (-)
Gene ID: HRGMv2_3832_183_3
Type: pfam
Location: 1396 - 1848 (-)
Type: pfam
Location: 1396 - 1848 (-)
Gene ID: HRGMv2_3832_183_4
Type: TC
Location: 1925 - 2632 (+)
Type: TC
Location: 1925 - 2632 (+)
Gene ID: HRGMv2_3832_183_5
Type: pfam
Location: 2688 - 3083 (+)
Type: pfam
Location: 2688 - 3083 (+)
Gene ID: HRGMv2_3832_183_6
Type: STP
Location: 3203 - 3820 (+)
Type: STP
Location: 3203 - 3820 (+)
Gene ID: HRGMv2_3832_183_7
Type: TC
Location: 3837 - 5213 (-)
Type: TC
Location: 3837 - 5213 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Kocuria
Species
Kocuria sp030453435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.