Cluster: HRGMv2_3832_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3832
- CGC Family ID: CGCFAM_00140
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3832_145 | HRGMv2_3832_145_1 | 3 | 779 | + | GT2 |
| TC | HRGMv2_3832_145 | HRGMv2_3832_145_2 | 809 | 2719 | + | 9.B.18.2.1 |
| TC | HRGMv2_3832_145 | HRGMv2_3832_145_3 | 2716 | 3828 | + | 9.B.146.1.2 |
| NULL(UNKNOWN) | HRGMv2_3832_145 | HRGMv2_3832_145_4 | 3825 | 4415 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3832_145 | HRGMv2_3832_145_5 | 4402 | 4779 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3832_145 | HRGMv2_3832_145_6 | 4810 | 5601 | + | 3.A.2.1.7 |
Gene ID: HRGMv2_3832_145_1
Type: CAZyme
Location: 3 - 779 (+)
Type: CAZyme
Location: 3 - 779 (+)
Gene ID: HRGMv2_3832_145_2
Type: TC
Location: 809 - 2719 (+)
Type: TC
Location: 809 - 2719 (+)
Gene ID: HRGMv2_3832_145_3
Type: TC
Location: 2716 - 3828 (+)
Type: TC
Location: 2716 - 3828 (+)
Gene ID: HRGMv2_3832_145_4
Type:
Location: 3825 - 4415 (+)
Type:
Location: 3825 - 4415 (+)
Gene ID: HRGMv2_3832_145_5
Type:
Location: 4402 - 4779 (+)
Type:
Location: 4402 - 4779 (+)
Gene ID: HRGMv2_3832_145_6
Type: TC
Location: 4810 - 5601 (+)
Type: TC
Location: 4810 - 5601 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Kocuria
Species
Kocuria sp030453435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.