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Cluster: HRGMv2_3816_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3816_1 HRGMv2_3816_1_2 2124 3482 + GH4
pfam HRGMv2_3816_1 HRGMv2_3816_1_3 3575 4726 - FG-GAP_3
CAZyme HRGMv2_3816_1 HRGMv2_3816_1_4 4723 8409 - GH20
pfam HRGMv2_3816_1 HRGMv2_3816_1_5 8594 10072 - GalP_UDP_transf
pfam HRGMv2_3816_1 HRGMv2_3816_1_6 10069 11163 - APH
CAZyme HRGMv2_3816_1 HRGMv2_3816_1_7 11163 13325 - GH112
TC HRGMv2_3816_1 HRGMv2_3816_1_8 13361 14305 - 3.A.1.1.48
TC HRGMv2_3816_1 HRGMv2_3816_1_9 14292 15260 - 3.A.1.1.48
TC HRGMv2_3816_1 HRGMv2_3816_1_10 15346 16680 - 3.A.1.1.48
pfam HRGMv2_3816_1 HRGMv2_3816_1_11 16911 18083 + ROK
NULL(UNKNOWN) HRGMv2_3816_1 HRGMv2_3816_1_12 18769 18927 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3816_1 HRGMv2_3816_1_13 19145 21214 - 3.A.1.5.26
TC HRGMv2_3816_1 HRGMv2_3816_1_14 21217 22206 - 3.A.1.5.20
TC HRGMv2_3816_1 HRGMv2_3816_1_15 22203 23162 - 3.A.1.5.20
TC HRGMv2_3816_1 HRGMv2_3816_1_16 23215 25020 - 3.A.1.5.12
pfam HRGMv2_3816_1 HRGMv2_3816_1_17 25210 26370 + ROK
CAZyme HRGMv2_3816_1 HRGMv2_3816_1_18 26382 27395 + GH29
Gene ID: HRGMv2_3816_1_2
Type: CAZyme
Location: 2124 - 3482 (+)
Gene ID: HRGMv2_3816_1_3
Type: pfam
Location: 3575 - 4726 (-)
Gene ID: HRGMv2_3816_1_4
Type: CAZyme
Location: 4723 - 8409 (-)
Gene ID: HRGMv2_3816_1_5
Type: pfam
Location: 8594 - 10072 (-)
Gene ID: HRGMv2_3816_1_6
Type: pfam
Location: 10069 - 11163 (-)
Gene ID: HRGMv2_3816_1_7
Type: CAZyme
Location: 11163 - 13325 (-)
Gene ID: HRGMv2_3816_1_8
Type: TC
Location: 13361 - 14305 (-)
Gene ID: HRGMv2_3816_1_9
Type: TC
Location: 14292 - 15260 (-)
Gene ID: HRGMv2_3816_1_10
Type: TC
Location: 15346 - 16680 (-)
Gene ID: HRGMv2_3816_1_11
Type: pfam
Location: 16911 - 18083 (+)
Gene ID: HRGMv2_3816_1_12
Type:
Location: 18769 - 18927 (+)
Gene ID: HRGMv2_3816_1_13
Type: TC
Location: 19145 - 21214 (-)
Gene ID: HRGMv2_3816_1_14
Type: TC
Location: 21217 - 22206 (-)
Gene ID: HRGMv2_3816_1_15
Type: TC
Location: 22203 - 23162 (-)
Gene ID: HRGMv2_3816_1_16
Type: TC
Location: 23215 - 25020 (-)
Gene ID: HRGMv2_3816_1_17
Type: pfam
Location: 25210 - 26370 (+)
Gene ID: HRGMv2_3816_1_18
Type: CAZyme
Location: 26382 - 27395 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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