Cluster: HRGMv2_3813_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3813
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3813_109 | HRGMv2_3813_109_5 | 4595 | 5722 | + | GT28 |
| TC | HRGMv2_3813_109 | HRGMv2_3813_109_6 | 5835 | 6932 | + | 3.A.11.1.3 |
| pfam | HRGMv2_3813_109 | HRGMv2_3813_109_7 | 6947 | 9064 | + | Topoisom_bac | Zn_ribbon_Top1 | Zn_ribbon_Top1 | Zn_ribbon_Top1 | Toprim |
| pfam | HRGMv2_3813_109 | HRGMv2_3813_109_8 | 9048 | 10373 | + | GIDA |
| TC | HRGMv2_3813_109 | HRGMv2_3813_109_9 | 10380 | 11036 | + | 2.A.115.2.15 |
Gene ID: HRGMv2_3813_109_5
Type: CAZyme
Location: 4595 - 5722 (+)
Type: CAZyme
Location: 4595 - 5722 (+)
Gene ID: HRGMv2_3813_109_6
Type: TC
Location: 5835 - 6932 (+)
Type: TC
Location: 5835 - 6932 (+)
Gene ID: HRGMv2_3813_109_7
Type: pfam
Location: 6947 - 9064 (+)
Type: pfam
Location: 6947 - 9064 (+)
Gene ID: HRGMv2_3813_109_8
Type: pfam
Location: 9048 - 10373 (+)
Type: pfam
Location: 9048 - 10373 (+)
Gene ID: HRGMv2_3813_109_9
Type: TC
Location: 10380 - 11036 (+)
Type: TC
Location: 10380 - 11036 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.