Cluster: HRGMv2_3810_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3810
- CGC Family ID: CGCFAM_05898
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3810_70 | HRGMv2_3810_70_1 | 107 | 1504 | - | AA4 |
| CAZyme | HRGMv2_3810_70 | HRGMv2_3810_70_2 | 1570 | 2970 | - | AA4 |
| CAZyme | HRGMv2_3810_70 | HRGMv2_3810_70_3 | 2982 | 4388 | - | AA4 |
| pfam | HRGMv2_3810_70 | HRGMv2_3810_70_4 | 4580 | 5833 | - | Toluene_X |
| NULL(UNKNOWN) | HRGMv2_3810_70 | HRGMv2_3810_70_5 | 5929 | 6753 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3810_70 | HRGMv2_3810_70_6 | 6981 | 8531 | + | 2.A.25.1.5 |
Gene ID: HRGMv2_3810_70_1
Type: CAZyme
Location: 107 - 1504 (-)
Type: CAZyme
Location: 107 - 1504 (-)
Gene ID: HRGMv2_3810_70_2
Type: CAZyme
Location: 1570 - 2970 (-)
Type: CAZyme
Location: 1570 - 2970 (-)
Gene ID: HRGMv2_3810_70_3
Type: CAZyme
Location: 2982 - 4388 (-)
Type: CAZyme
Location: 2982 - 4388 (-)
Gene ID: HRGMv2_3810_70_4
Type: pfam
Location: 4580 - 5833 (-)
Type: pfam
Location: 4580 - 5833 (-)
Gene ID: HRGMv2_3810_70_5
Type:
Location: 5929 - 6753 (-)
Type:
Location: 5929 - 6753 (-)
Gene ID: HRGMv2_3810_70_6
Type: TC
Location: 6981 - 8531 (+)
Type: TC
Location: 6981 - 8531 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.