Cluster: HRGMv2_3810_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3810
- CGC Family ID: CGCFAM_02410
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3810_9 | HRGMv2_3810_9_5 | 6791 | 7993 | + | GH171 |
| pfam | HRGMv2_3810_9 | HRGMv2_3810_9_6 | 8257 | 8544 | + | Cpn10 |
| pfam | HRGMv2_3810_9 | HRGMv2_3810_9_7 | 8598 | 10226 | + | Cpn60_TCP1 |
| TC | HRGMv2_3810_9 | HRGMv2_3810_9_8 | 10442 | 11011 | + | 2.A.51.1.6 |
| TC | HRGMv2_3810_9 | HRGMv2_3810_9_9 | 11024 | 11593 | + | 2.A.51.1.6 |
Gene ID: HRGMv2_3810_9_5
Type: CAZyme
Location: 6791 - 7993 (+)
Type: CAZyme
Location: 6791 - 7993 (+)
Gene ID: HRGMv2_3810_9_6
Type: pfam
Location: 8257 - 8544 (+)
Type: pfam
Location: 8257 - 8544 (+)
Gene ID: HRGMv2_3810_9_7
Type: pfam
Location: 8598 - 10226 (+)
Type: pfam
Location: 8598 - 10226 (+)
Gene ID: HRGMv2_3810_9_8
Type: TC
Location: 10442 - 11011 (+)
Type: TC
Location: 10442 - 11011 (+)
Gene ID: HRGMv2_3810_9_9
Type: TC
Location: 11024 - 11593 (+)
Type: TC
Location: 11024 - 11593 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.