Cluster: HRGMv2_3809_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3809
- CGC Family ID: CGCFAM_00465
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3809_96 | HRGMv2_3809_96_24 | 29843 | 31003 | + | 4.D.2.1.4 |
| pfam | HRGMv2_3809_96 | HRGMv2_3809_96_25 | 31281 | 32231 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_3809_96 | HRGMv2_3809_96_26 | 32224 | 34320 | + | GT83 |
| STP | HRGMv2_3809_96 | HRGMv2_3809_96_27 | 34320 | 34577 | + | PTS-HPr |
| TC | HRGMv2_3809_96 | HRGMv2_3809_96_28 | 34842 | 36548 | + | 8.A.7.1.1 |
Gene ID: HRGMv2_3809_96_24
Type: TC
Location: 29843 - 31003 (+)
Type: TC
Location: 29843 - 31003 (+)
Gene ID: HRGMv2_3809_96_25
Type: pfam
Location: 31281 - 32231 (+)
Type: pfam
Location: 31281 - 32231 (+)
Gene ID: HRGMv2_3809_96_26
Type: CAZyme
Location: 32224 - 34320 (+)
Type: CAZyme
Location: 32224 - 34320 (+)
Gene ID: HRGMv2_3809_96_27
Type: STP
Location: 34320 - 34577 (+)
Type: STP
Location: 34320 - 34577 (+)
Gene ID: HRGMv2_3809_96_28
Type: TC
Location: 34842 - 36548 (+)
Type: TC
Location: 34842 - 36548 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Succiniclasticum
Species
Succiniclasticum sp937926555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.