Cluster: HRGMv2_3809_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3809
- CGC Family ID: CGCFAM_10459
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3809_42 | HRGMv2_3809_42_39 | 41923 | 42549 | + | GH23 |
| pfam | HRGMv2_3809_42 | HRGMv2_3809_42_40 | 43427 | 44356 | + | Sel1 | Sel1 | Sel1 | Sel1 | Sel1 |
| CAZyme | HRGMv2_3809_42 | HRGMv2_3809_42_41 | 44494 | 45624 | - | GH18 |
| TC | HRGMv2_3809_42 | HRGMv2_3809_42_42 | 45945 | 47168 | + | 2.A.1.2.49 |
| pfam | HRGMv2_3809_42 | HRGMv2_3809_42_43 | 47407 | 47961 | + | Hexapep |
| NULL(UNKNOWN) | HRGMv2_3809_42 | HRGMv2_3809_42_44 | 47973 | 48878 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3809_42 | HRGMv2_3809_42_45 | 49103 | 49573 | + | 3.D.1.8.1 |
Gene ID: HRGMv2_3809_42_39
Type: CAZyme
Location: 41923 - 42549 (+)
Type: CAZyme
Location: 41923 - 42549 (+)
Gene ID: HRGMv2_3809_42_40
Type: pfam
Location: 43427 - 44356 (+)
Type: pfam
Location: 43427 - 44356 (+)
Gene ID: HRGMv2_3809_42_41
Type: CAZyme
Location: 44494 - 45624 (-)
Type: CAZyme
Location: 44494 - 45624 (-)
Gene ID: HRGMv2_3809_42_42
Type: TC
Location: 45945 - 47168 (+)
Type: TC
Location: 45945 - 47168 (+)
Gene ID: HRGMv2_3809_42_43
Type: pfam
Location: 47407 - 47961 (+)
Type: pfam
Location: 47407 - 47961 (+)
Gene ID: HRGMv2_3809_42_44
Type:
Location: 47973 - 48878 (+)
Type:
Location: 47973 - 48878 (+)
Gene ID: HRGMv2_3809_42_45
Type: TC
Location: 49103 - 49573 (+)
Type: TC
Location: 49103 - 49573 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Succiniclasticum
Species
Succiniclasticum sp937926555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.