Cluster: HRGMv2_3809_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3809
- CGC Family ID: CGCFAM_05504
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3809_36 | HRGMv2_3809_36_45 | 40440 | 41222 | - | 9.B.10.1.1 |
| pfam | HRGMv2_3809_36 | HRGMv2_3809_36_46 | 41216 | 41593 | - | PTPS |
| pfam | HRGMv2_3809_36 | HRGMv2_3809_36_47 | 41607 | 42071 | - | SpoU_methylase |
| CAZyme | HRGMv2_3809_36 | HRGMv2_3809_36_48 | 42105 | 43562 | - | GH73 |
| pfam | HRGMv2_3809_36 | HRGMv2_3809_36_49 | 43780 | 44454 | + | Lactamase_B | Lactamase_B_2 | Lactamase_B_3 |
| STP | HRGMv2_3809_36 | HRGMv2_3809_36_50 | 44580 | 45611 | - | Peripla_BP_2 |
| TC | HRGMv2_3809_36 | HRGMv2_3809_36_51 | 45662 | 47599 | - | 1.B.14.1.4 |
Gene ID: HRGMv2_3809_36_45
Type: TC
Location: 40440 - 41222 (-)
Type: TC
Location: 40440 - 41222 (-)
Gene ID: HRGMv2_3809_36_46
Type: pfam
Location: 41216 - 41593 (-)
Type: pfam
Location: 41216 - 41593 (-)
Gene ID: HRGMv2_3809_36_47
Type: pfam
Location: 41607 - 42071 (-)
Type: pfam
Location: 41607 - 42071 (-)
Gene ID: HRGMv2_3809_36_48
Type: CAZyme
Location: 42105 - 43562 (-)
Type: CAZyme
Location: 42105 - 43562 (-)
Gene ID: HRGMv2_3809_36_49
Type: pfam
Location: 43780 - 44454 (+)
Type: pfam
Location: 43780 - 44454 (+)
Gene ID: HRGMv2_3809_36_50
Type: STP
Location: 44580 - 45611 (-)
Type: STP
Location: 44580 - 45611 (-)
Gene ID: HRGMv2_3809_36_51
Type: TC
Location: 45662 - 47599 (-)
Type: TC
Location: 45662 - 47599 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Succiniclasticum
Species
Succiniclasticum sp937926555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.