Cluster: HRGMv2_3809_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3809
- CGC Family ID: CGCFAM_09478
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3809_3 | HRGMv2_3809_3_38 | 20141 | 21373 | - | 2.A.23.1.5 |
| pfam | HRGMv2_3809_3 | HRGMv2_3809_3_39 | 21651 | 22232 | - | ECF-ribofla_trS | ECF_trnsprt |
| CAZyme | HRGMv2_3809_3 | HRGMv2_3809_3_40 | 22391 | 23191 | - | CE4 |
| pfam | HRGMv2_3809_3 | HRGMv2_3809_3_41 | 23409 | 24233 | - | Radical_SAM |
| pfam | HRGMv2_3809_3 | HRGMv2_3809_3_42 | 24387 | 25787 | - | AMMECR1 | LigB |
| TC | HRGMv2_3809_3 | HRGMv2_3809_3_43 | 26010 | 28031 | + | 3.A.3.5.7 |
Gene ID: HRGMv2_3809_3_38
Type: TC
Location: 20141 - 21373 (-)
Type: TC
Location: 20141 - 21373 (-)
Gene ID: HRGMv2_3809_3_39
Type: pfam
Location: 21651 - 22232 (-)
Type: pfam
Location: 21651 - 22232 (-)
Gene ID: HRGMv2_3809_3_40
Type: CAZyme
Location: 22391 - 23191 (-)
Type: CAZyme
Location: 22391 - 23191 (-)
Gene ID: HRGMv2_3809_3_41
Type: pfam
Location: 23409 - 24233 (-)
Type: pfam
Location: 23409 - 24233 (-)
Gene ID: HRGMv2_3809_3_42
Type: pfam
Location: 24387 - 25787 (-)
Type: pfam
Location: 24387 - 25787 (-)
Gene ID: HRGMv2_3809_3_43
Type: TC
Location: 26010 - 28031 (+)
Type: TC
Location: 26010 - 28031 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Succiniclasticum
Species
Succiniclasticum sp937926555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.