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Cluster: HRGMv2_3805_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3805_65 HRGMv2_3805_65_7 5651 7003 + 2.A.66.1.32
CAZyme HRGMv2_3805_65 HRGMv2_3805_65_8 7146 8012 + CE4
pfam HRGMv2_3805_65 HRGMv2_3805_65_9 7996 8817 + Polysacc_deac_1
TC HRGMv2_3805_65 HRGMv2_3805_65_10 8866 9696 + 3.A.1.3.23
TC HRGMv2_3805_65 HRGMv2_3805_65_11 9757 10413 + 3.A.1.3.15
TC HRGMv2_3805_65 HRGMv2_3805_65_12 10406 11131 + 3.A.1.3.15
pfam HRGMv2_3805_65 HRGMv2_3805_65_13 11140 11868 + Asp_Glu_race
NULL(UNKNOWN) HRGMv2_3805_65 HRGMv2_3805_65_14 11954 12583 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3805_65 HRGMv2_3805_65_15 12622 15915 - 3.A.17.1.1
Gene ID: HRGMv2_3805_65_7
Type: TC
Location: 5651 - 7003 (+)
Gene ID: HRGMv2_3805_65_8
Type: CAZyme
Location: 7146 - 8012 (+)
Gene ID: HRGMv2_3805_65_9
Type: pfam
Location: 7996 - 8817 (+)
Gene ID: HRGMv2_3805_65_10
Type: TC
Location: 8866 - 9696 (+)
Gene ID: HRGMv2_3805_65_11
Type: TC
Location: 9757 - 10413 (+)
Gene ID: HRGMv2_3805_65_12
Type: TC
Location: 10406 - 11131 (+)
Gene ID: HRGMv2_3805_65_13
Type: pfam
Location: 11140 - 11868 (+)
Gene ID: HRGMv2_3805_65_14
Type:
Location: 11954 - 12583 (+)
Gene ID: HRGMv2_3805_65_15
Type: TC
Location: 12622 - 15915 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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