Cluster: HRGMv2_3789_CGC39
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3789
- CGC Family ID: CGCFAM_04102
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3789_33 | HRGMv2_3789_33_28 | 27615 | 28787 | + | AA10 | CBM73 |
| CAZyme | HRGMv2_3789_33 | HRGMv2_3789_33_29 | 28966 | 29811 | + | AA10 |
| CAZyme | HRGMv2_3789_33 | HRGMv2_3789_33_30 | 29817 | 30125 | + | CBM73 |
| pfam | HRGMv2_3789_33 | HRGMv2_3789_33_31 | 30200 | 30910 | - | NAD_binding_1 | FAD_binding_6 |
| TC | HRGMv2_3789_33 | HRGMv2_3789_33_32 | 31034 | 32002 | + | 3.A.1.105.17 |
| TC | HRGMv2_3789_33 | HRGMv2_3789_33_33 | 31999 | 32790 | + | 3.A.1.105.17 |
Gene ID: HRGMv2_3789_33_28
Type: CAZyme
Location: 27615 - 28787 (+)
Type: CAZyme
Location: 27615 - 28787 (+)
Gene ID: HRGMv2_3789_33_29
Type: CAZyme
Location: 28966 - 29811 (+)
Type: CAZyme
Location: 28966 - 29811 (+)
Gene ID: HRGMv2_3789_33_30
Type: CAZyme
Location: 29817 - 30125 (+)
Type: CAZyme
Location: 29817 - 30125 (+)
Gene ID: HRGMv2_3789_33_31
Type: pfam
Location: 30200 - 30910 (-)
Type: pfam
Location: 30200 - 30910 (-)
Gene ID: HRGMv2_3789_33_32
Type: TC
Location: 31034 - 32002 (+)
Type: TC
Location: 31034 - 32002 (+)
Gene ID: HRGMv2_3789_33_33
Type: TC
Location: 31999 - 32790 (+)
Type: TC
Location: 31999 - 32790 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.