Cluster: HRGMv2_3789_CGC38
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3789
- CGC Family ID: CGCFAM_10454
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3789_32 | HRGMv2_3789_32_32 | 31310 | 32581 | + | 1.A.23.4.5 |
| CAZyme | HRGMv2_3789_32 | HRGMv2_3789_32_33 | 32710 | 34884 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_3789_32 | HRGMv2_3789_32_34 | 35017 | 35562 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | HRGMv2_3789_32 | HRGMv2_3789_32_35 | 35627 | 36796 | - | S1_8 |
| TC | HRGMv2_3789_32 | HRGMv2_3789_32_36 | 36965 | 37417 | + | 9.B.44.1.2 |
| NULL(UNKNOWN) | HRGMv2_3789_32 | HRGMv2_3789_32_37 | 37505 | 37828 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3789_32 | HRGMv2_3789_32_38 | 37939 | 39240 | - | 2.A.3.2.7 |
Gene ID: HRGMv2_3789_32_32
Type: TC
Location: 31310 - 32581 (+)
Type: TC
Location: 31310 - 32581 (+)
Gene ID: HRGMv2_3789_32_33
Type: CAZyme
Location: 32710 - 34884 (+)
Type: CAZyme
Location: 32710 - 34884 (+)
Gene ID: HRGMv2_3789_32_34
Type:
Location: 35017 - 35562 (+)
Type:
Location: 35017 - 35562 (+)
Gene ID: HRGMv2_3789_32_35
Type: sulfatase
Location: 35627 - 36796 (-)
Type: sulfatase
Location: 35627 - 36796 (-)
Gene ID: HRGMv2_3789_32_36
Type: TC
Location: 36965 - 37417 (+)
Type: TC
Location: 36965 - 37417 (+)
Gene ID: HRGMv2_3789_32_37
Type:
Location: 37505 - 37828 (-)
Type:
Location: 37505 - 37828 (-)
Gene ID: HRGMv2_3789_32_38
Type: TC
Location: 37939 - 39240 (-)
Type: TC
Location: 37939 - 39240 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.