Cluster: HRGMv2_3789_CGC36
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3789
- CGC Family ID: CGCFAM_09195
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3789_28 | HRGMv2_3789_28_26 | 24240 | 26687 | - | 3.A.7.2.1 |
| pfam | HRGMv2_3789_28 | HRGMv2_3789_28_27 | 26772 | 27038 | - | VirB3 |
| TC | HRGMv2_3789_28 | HRGMv2_3789_28_28 | 27073 | 27492 | - | 3.A.7.3.1 |
| CAZyme | HRGMv2_3789_28 | HRGMv2_3789_28_29 | 27566 | 28531 | - | GH23 |
| TC | HRGMv2_3789_28 | HRGMv2_3789_28_30 | 28535 | 29578 | - | 3.A.7.3.1 |
| TC | HRGMv2_3789_28 | HRGMv2_3789_28_31 | 29593 | 30846 | - | 3.A.7.5.1 |
| TC | HRGMv2_3789_28 | HRGMv2_3789_28_32 | 30843 | 31622 | - | 3.A.7.2.1 |
| pfam | HRGMv2_3789_28 | HRGMv2_3789_28_33 | 31619 | 32665 | - | VirB8 |
| NULL(UNKNOWN) | HRGMv2_3789_28 | HRGMv2_3789_28_34 | 32755 | 33312 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3789_28 | HRGMv2_3789_28_35 | 33626 | 35305 | - | 3.A.7.1.1 |
| NULL(UNKNOWN) | HRGMv2_3789_28 | HRGMv2_3789_28_36 | 35342 | 35599 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3789_28 | HRGMv2_3789_28_37 | 35730 | 36149 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3789_28 | HRGMv2_3789_28_38 | 36275 | 37486 | + | 2.A.1.2.65 |
Gene ID: HRGMv2_3789_28_26
Type: TC
Location: 24240 - 26687 (-)
Type: TC
Location: 24240 - 26687 (-)
Gene ID: HRGMv2_3789_28_27
Type: pfam
Location: 26772 - 27038 (-)
Type: pfam
Location: 26772 - 27038 (-)
Gene ID: HRGMv2_3789_28_28
Type: TC
Location: 27073 - 27492 (-)
Type: TC
Location: 27073 - 27492 (-)
Gene ID: HRGMv2_3789_28_29
Type: CAZyme
Location: 27566 - 28531 (-)
Type: CAZyme
Location: 27566 - 28531 (-)
Gene ID: HRGMv2_3789_28_30
Type: TC
Location: 28535 - 29578 (-)
Type: TC
Location: 28535 - 29578 (-)
Gene ID: HRGMv2_3789_28_31
Type: TC
Location: 29593 - 30846 (-)
Type: TC
Location: 29593 - 30846 (-)
Gene ID: HRGMv2_3789_28_32
Type: TC
Location: 30843 - 31622 (-)
Type: TC
Location: 30843 - 31622 (-)
Gene ID: HRGMv2_3789_28_33
Type: pfam
Location: 31619 - 32665 (-)
Type: pfam
Location: 31619 - 32665 (-)
Gene ID: HRGMv2_3789_28_34
Type:
Location: 32755 - 33312 (-)
Type:
Location: 32755 - 33312 (-)
Gene ID: HRGMv2_3789_28_35
Type: TC
Location: 33626 - 35305 (-)
Type: TC
Location: 33626 - 35305 (-)
Gene ID: HRGMv2_3789_28_36
Type:
Location: 35342 - 35599 (-)
Type:
Location: 35342 - 35599 (-)
Gene ID: HRGMv2_3789_28_37
Type:
Location: 35730 - 36149 (+)
Type:
Location: 35730 - 36149 (+)
Gene ID: HRGMv2_3789_28_38
Type: TC
Location: 36275 - 37486 (+)
Type: TC
Location: 36275 - 37486 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.