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Cluster: HRGMv2_3789_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3789_24 HRGMv2_3789_24_2 559 1884 + 9.B.10.1.1
TC HRGMv2_3789_24 HRGMv2_3789_24_3 1990 3597 - 3.A.1.120.3
TF HRGMv2_3789_24 HRGMv2_3789_24_4 3823 4722 - HTH_1
peptidase HRGMv2_3789_24 HRGMv2_3789_24_5 4870 6129 + S12.950
TC HRGMv2_3789_24 HRGMv2_3789_24_6 6126 7310 + 2.A.1.2.87
STP HRGMv2_3789_24 HRGMv2_3789_24_7 7632 9248 - EAL
TC HRGMv2_3789_24 HRGMv2_3789_24_8 9480 10853 + 2.A.3.1.7
CAZyme HRGMv2_3789_24 HRGMv2_3789_24_9 11171 11947 + GH23
Gene ID: HRGMv2_3789_24_2
Type: TC
Location: 559 - 1884 (+)
Gene ID: HRGMv2_3789_24_3
Type: TC
Location: 1990 - 3597 (-)
Gene ID: HRGMv2_3789_24_4
Type: TF
Location: 3823 - 4722 (-)
Gene ID: HRGMv2_3789_24_5
Type: peptidase
Location: 4870 - 6129 (+)
Gene ID: HRGMv2_3789_24_6
Type: TC
Location: 6126 - 7310 (+)
Gene ID: HRGMv2_3789_24_7
Type: STP
Location: 7632 - 9248 (-)
Gene ID: HRGMv2_3789_24_8
Type: TC
Location: 9480 - 10853 (+)
Gene ID: HRGMv2_3789_24_9
Type: CAZyme
Location: 11171 - 11947 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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