Cluster: HRGMv2_3789_CGC30
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3789
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3789_19 | HRGMv2_3789_19_52 | 49643 | 50278 | - | 1.A.12.3.1 |
| pfam | HRGMv2_3789_19 | HRGMv2_3789_19_53 | 50413 | 51162 | - | Cytochrom_C1 |
| TC | HRGMv2_3789_19 | HRGMv2_3789_19_54 | 51155 | 52414 | - | 3.D.3.1.1 |
| TC | HRGMv2_3789_19 | HRGMv2_3789_19_55 | 52414 | 53034 | - | 3.D.3.1.1 |
| CAZyme | HRGMv2_3789_19 | HRGMv2_3789_19_56 | 53264 | 54184 | - | GH23 |
Gene ID: HRGMv2_3789_19_52
Type: TC
Location: 49643 - 50278 (-)
Type: TC
Location: 49643 - 50278 (-)
Gene ID: HRGMv2_3789_19_53
Type: pfam
Location: 50413 - 51162 (-)
Type: pfam
Location: 50413 - 51162 (-)
Gene ID: HRGMv2_3789_19_54
Type: TC
Location: 51155 - 52414 (-)
Type: TC
Location: 51155 - 52414 (-)
Gene ID: HRGMv2_3789_19_55
Type: TC
Location: 52414 - 53034 (-)
Type: TC
Location: 52414 - 53034 (-)
Gene ID: HRGMv2_3789_19_56
Type: CAZyme
Location: 53264 - 54184 (-)
Type: CAZyme
Location: 53264 - 54184 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.