Cluster: HRGMv2_3789_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: HRGMv2_3789
- CGC Family ID: CGCFAM_01245
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3789_14 | HRGMv2_3789_14_82 | 72761 | 74374 | + | GH13_23 |
| TC | HRGMv2_3789_14 | HRGMv2_3789_14_83 | 74552 | 77308 | - | 1.B.14.12.1 |
| CAZyme | HRGMv2_3789_14 | HRGMv2_3789_14_84 | 77525 | 79576 | - | GH97 |
| NULL(UNKNOWN) | HRGMv2_3789_14 | HRGMv2_3789_14_85 | 79814 | 82006 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3789_14 | HRGMv2_3789_14_86 | 82003 | 83490 | + | 2.A.2.6.3 |
| CAZyme | HRGMv2_3789_14 | HRGMv2_3789_14_87 | 83490 | 85205 | + | GH13_2 |
Gene ID: HRGMv2_3789_14_82
Type: CAZyme
Location: 72761 - 74374 (+)
Type: CAZyme
Location: 72761 - 74374 (+)
Gene ID: HRGMv2_3789_14_83
Type: TC
Location: 74552 - 77308 (-)
Type: TC
Location: 74552 - 77308 (-)
Gene ID: HRGMv2_3789_14_84
Type: CAZyme
Location: 77525 - 79576 (-)
Type: CAZyme
Location: 77525 - 79576 (-)
Gene ID: HRGMv2_3789_14_85
Type:
Location: 79814 - 82006 (+)
Type:
Location: 79814 - 82006 (+)
Gene ID: HRGMv2_3789_14_86
Type: TC
Location: 82003 - 83490 (+)
Type: TC
Location: 82003 - 83490 (+)
Gene ID: HRGMv2_3789_14_87
Type: CAZyme
Location: 83490 - 85205 (+)
Type: CAZyme
Location: 83490 - 85205 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.