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Cluster: HRGMv2_3789_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3789_12 HRGMv2_3789_12_18 28483 30603 - CBM48 | GH13_11
CAZyme HRGMv2_3789_12 HRGMv2_3789_12_19 30729 33302 - GH13_26
CAZyme HRGMv2_3789_12 HRGMv2_3789_12_20 33299 35143 - GH77
CAZyme HRGMv2_3789_12 HRGMv2_3789_12_21 35140 36855 - GH13_10
CAZyme HRGMv2_3789_12 HRGMv2_3789_12_22 36852 39089 - CBM48 | GH13_9
CAZyme HRGMv2_3789_12 HRGMv2_3789_12_23 39086 40612 - GT5
STP HRGMv2_3789_12 HRGMv2_3789_12_24 41054 41482 + PAS
pfam HRGMv2_3789_12 HRGMv2_3789_12_25 41479 43008 + NAD_binding_1 | Flavodoxin_1 | FAD_binding_1
TC HRGMv2_3789_12 HRGMv2_3789_12_26 43208 43876 - 3.A.1.6.8
TC HRGMv2_3789_12 HRGMv2_3789_12_27 43866 44549 - 3.A.1.8.1
TC HRGMv2_3789_12 HRGMv2_3789_12_28 44553 45296 - 3.A.1.8.1
TF HRGMv2_3789_12 HRGMv2_3789_12_29 45316 46092 - Crp
pfam HRGMv2_3789_12 HRGMv2_3789_12_30 46104 47327 - HemN_C
TC HRGMv2_3789_12 HRGMv2_3789_12_31 47513 48844 - 2.A.1.8.11
pfam HRGMv2_3789_12 HRGMv2_3789_12_32 48868 49767 - Rotamase | Rotamase_2 | Rotamase_3
TC HRGMv2_3789_12 HRGMv2_3789_12_33 49771 50478 - 5.A.3.1.1
pfam HRGMv2_3789_12 HRGMv2_3789_12_34 50475 51155 - Nitrate_red_del
TC HRGMv2_3789_12 HRGMv2_3789_12_35 51155 52699 - 5.A.3.1.1
TC HRGMv2_3789_12 HRGMv2_3789_12_36 52699 56505 - 5.A.3.1.1
TC HRGMv2_3789_12 HRGMv2_3789_12_37 56578 57996 - 2.A.1.8.11
Gene ID: HRGMv2_3789_12_18
Type: CAZyme
Location: 28483 - 30603 (-)
Gene ID: HRGMv2_3789_12_19
Type: CAZyme
Location: 30729 - 33302 (-)
Gene ID: HRGMv2_3789_12_20
Type: CAZyme
Location: 33299 - 35143 (-)
Gene ID: HRGMv2_3789_12_21
Type: CAZyme
Location: 35140 - 36855 (-)
Gene ID: HRGMv2_3789_12_22
Type: CAZyme
Location: 36852 - 39089 (-)
Gene ID: HRGMv2_3789_12_23
Type: CAZyme
Location: 39086 - 40612 (-)
Gene ID: HRGMv2_3789_12_24
Type: STP
Location: 41054 - 41482 (+)
Gene ID: HRGMv2_3789_12_25
Type: pfam
Location: 41479 - 43008 (+)
Gene ID: HRGMv2_3789_12_26
Type: TC
Location: 43208 - 43876 (-)
Gene ID: HRGMv2_3789_12_27
Type: TC
Location: 43866 - 44549 (-)
Gene ID: HRGMv2_3789_12_28
Type: TC
Location: 44553 - 45296 (-)
Gene ID: HRGMv2_3789_12_29
Type: TF
Location: 45316 - 46092 (-)
Gene ID: HRGMv2_3789_12_30
Type: pfam
Location: 46104 - 47327 (-)
Gene ID: HRGMv2_3789_12_31
Type: TC
Location: 47513 - 48844 (-)
Gene ID: HRGMv2_3789_12_32
Type: pfam
Location: 48868 - 49767 (-)
Gene ID: HRGMv2_3789_12_33
Type: TC
Location: 49771 - 50478 (-)
Gene ID: HRGMv2_3789_12_34
Type: pfam
Location: 50475 - 51155 (-)
Gene ID: HRGMv2_3789_12_35
Type: TC
Location: 51155 - 52699 (-)
Gene ID: HRGMv2_3789_12_36
Type: TC
Location: 52699 - 56505 (-)
Gene ID: HRGMv2_3789_12_37
Type: TC
Location: 56578 - 57996 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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