Cluster: HRGMv2_3789_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3789
- CGC Family ID: CGCFAM_02221
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3789_9 | HRGMv2_3789_9_63 | 77860 | 80478 | - | GH2 |
| pfam | HRGMv2_3789_9 | HRGMv2_3789_9_64 | 80570 | 81796 | - | GlcNAc_2-epim |
| STP | HRGMv2_3789_9 | HRGMv2_3789_9_65 | 81793 | 82788 | - | PfkB |
| TC | HRGMv2_3789_9 | HRGMv2_3789_9_66 | 82796 | 84109 | - | 2.A.1.7.10 |
| TF | HRGMv2_3789_9 | HRGMv2_3789_9_67 | 84170 | 85219 | - | LacI |
| CAZyme | HRGMv2_3789_9 | HRGMv2_3789_9_68 | 85316 | 87781 | - | GH92 |
| TC | HRGMv2_3789_9 | HRGMv2_3789_9_69 | 88911 | 91988 | + | 1.B.14.12.2 |
| STP | HRGMv2_3789_9 | HRGMv2_3789_9_70 | 92193 | 92387 | + | HMA |
| TF | HRGMv2_3789_9 | HRGMv2_3789_9_71 | 92468 | 92923 | - | MerR |
| TC | HRGMv2_3789_9 | HRGMv2_3789_9_72 | 92935 | 95436 | - | 3.A.3.5.20 |
| TC | HRGMv2_3789_9 | HRGMv2_3789_9_73 | 95610 | 98567 | - | 1.B.14.6.11 |
| NULL(UNKNOWN) | HRGMv2_3789_9 | HRGMv2_3789_9_74 | 98865 | 99332 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3789_9 | HRGMv2_3789_9_75 | 99623 | 100354 | - | 9.B.158.1.1 |
Gene ID: HRGMv2_3789_9_63
Type: CAZyme
Location: 77860 - 80478 (-)
Type: CAZyme
Location: 77860 - 80478 (-)
Gene ID: HRGMv2_3789_9_64
Type: pfam
Location: 80570 - 81796 (-)
Type: pfam
Location: 80570 - 81796 (-)
Gene ID: HRGMv2_3789_9_65
Type: STP
Location: 81793 - 82788 (-)
Type: STP
Location: 81793 - 82788 (-)
Gene ID: HRGMv2_3789_9_66
Type: TC
Location: 82796 - 84109 (-)
Type: TC
Location: 82796 - 84109 (-)
Gene ID: HRGMv2_3789_9_67
Type: TF
Location: 84170 - 85219 (-)
Type: TF
Location: 84170 - 85219 (-)
Gene ID: HRGMv2_3789_9_68
Type: CAZyme
Location: 85316 - 87781 (-)
Type: CAZyme
Location: 85316 - 87781 (-)
Gene ID: HRGMv2_3789_9_69
Type: TC
Location: 88911 - 91988 (+)
Type: TC
Location: 88911 - 91988 (+)
Gene ID: HRGMv2_3789_9_70
Type: STP
Location: 92193 - 92387 (+)
Type: STP
Location: 92193 - 92387 (+)
Gene ID: HRGMv2_3789_9_71
Type: TF
Location: 92468 - 92923 (-)
Type: TF
Location: 92468 - 92923 (-)
Gene ID: HRGMv2_3789_9_72
Type: TC
Location: 92935 - 95436 (-)
Type: TC
Location: 92935 - 95436 (-)
Gene ID: HRGMv2_3789_9_73
Type: TC
Location: 95610 - 98567 (-)
Type: TC
Location: 95610 - 98567 (-)
Gene ID: HRGMv2_3789_9_74
Type:
Location: 98865 - 99332 (-)
Type:
Location: 98865 - 99332 (-)
Gene ID: HRGMv2_3789_9_75
Type: TC
Location: 99623 - 100354 (-)
Type: TC
Location: 99623 - 100354 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.