Cluster: HRGMv2_3789_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3789
- CGC Family ID: CGCFAM_02817
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3789_1 | HRGMv2_3789_1_71 | 73308 | 74324 | - | 8.A.59.2.1 |
| peptidase | HRGMv2_3789_1 | HRGMv2_3789_1_72 | 74355 | 75014 | - | S09.UPW |
| CAZyme | HRGMv2_3789_1 | HRGMv2_3789_1_73 | 75065 | 76990 | - | GT2 |
| TC | HRGMv2_3789_1 | HRGMv2_3789_1_74 | 77487 | 79532 | + | 1.B.14.1.4 |
| NULL(UNKNOWN) | HRGMv2_3789_1 | HRGMv2_3789_1_75 | 79593 | 79763 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3789_1 | HRGMv2_3789_1_76 | 79980 | 80366 | + | 1.E.55.2.3 |
Gene ID: HRGMv2_3789_1_71
Type: TC
Location: 73308 - 74324 (-)
Type: TC
Location: 73308 - 74324 (-)
Gene ID: HRGMv2_3789_1_72
Type: peptidase
Location: 74355 - 75014 (-)
Type: peptidase
Location: 74355 - 75014 (-)
Gene ID: HRGMv2_3789_1_73
Type: CAZyme
Location: 75065 - 76990 (-)
Type: CAZyme
Location: 75065 - 76990 (-)
Gene ID: HRGMv2_3789_1_74
Type: TC
Location: 77487 - 79532 (+)
Type: TC
Location: 77487 - 79532 (+)
Gene ID: HRGMv2_3789_1_75
Type:
Location: 79593 - 79763 (-)
Type:
Location: 79593 - 79763 (-)
Gene ID: HRGMv2_3789_1_76
Type: TC
Location: 79980 - 80366 (+)
Type: TC
Location: 79980 - 80366 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.