Cluster: HRGMv2_3786_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3786
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3786_12 | HRGMv2_3786_12_6 | 6261 | 7403 | + | GH177 |
| pfam | HRGMv2_3786_12 | HRGMv2_3786_12_7 | 7621 | 8421 | - | Kdo |
| pfam | HRGMv2_3786_12 | HRGMv2_3786_12_8 | 8455 | 9090 | - | DFP |
| TC | HRGMv2_3786_12 | HRGMv2_3786_12_9 | 9113 | 10867 | - | 3.A.1.135.5 |
| pfam | HRGMv2_3786_12 | HRGMv2_3786_12_10 | 10992 | 12716 | - | SurA_N_3 |
| CAZyme | HRGMv2_3786_12 | HRGMv2_3786_12_11 | 13007 | 14113 | - | GT28 |
| TC | HRGMv2_3786_12 | HRGMv2_3786_12_12 | 14178 | 15407 | - | 2.A.103.1.3 |
Gene ID: HRGMv2_3786_12_6
Type: CAZyme
Location: 6261 - 7403 (+)
Type: CAZyme
Location: 6261 - 7403 (+)
Gene ID: HRGMv2_3786_12_7
Type: pfam
Location: 7621 - 8421 (-)
Type: pfam
Location: 7621 - 8421 (-)
Gene ID: HRGMv2_3786_12_8
Type: pfam
Location: 8455 - 9090 (-)
Type: pfam
Location: 8455 - 9090 (-)
Gene ID: HRGMv2_3786_12_9
Type: TC
Location: 9113 - 10867 (-)
Type: TC
Location: 9113 - 10867 (-)
Gene ID: HRGMv2_3786_12_10
Type: pfam
Location: 10992 - 12716 (-)
Type: pfam
Location: 10992 - 12716 (-)
Gene ID: HRGMv2_3786_12_11
Type: CAZyme
Location: 13007 - 14113 (-)
Type: CAZyme
Location: 13007 - 14113 (-)
Gene ID: HRGMv2_3786_12_12
Type: TC
Location: 14178 - 15407 (-)
Type: TC
Location: 14178 - 15407 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Lentisphaeria
Order
Victivallales
Family
Victivallaceae
Genus
CAAGED01
Species
CAAGED01 sp900768505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.