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Cluster: HRGMv2_3786_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3786_3 HRGMv2_3786_3_13 13945 16512 + 2.A.6.4.3
TC HRGMv2_3786_3 HRGMv2_3786_3_14 16533 19097 + 3.A.3.2.17
TC HRGMv2_3786_3 HRGMv2_3786_3_15 19397 21076 + 2.A.58.2.2
pfam HRGMv2_3786_3 HRGMv2_3786_3_16 21166 21861 + VTT_dom
pfam HRGMv2_3786_3 HRGMv2_3786_3_17 21915 22427 + DUF2062
CAZyme HRGMv2_3786_3 HRGMv2_3786_3_18 22680 24332 + GH36
CAZyme HRGMv2_3786_3 HRGMv2_3786_3_19 24438 26633 - GH95
pfam HRGMv2_3786_3 HRGMv2_3786_3_20 26656 28548 - Tad
pfam HRGMv2_3786_3 HRGMv2_3786_3_21 28541 29095 - TadE
TC HRGMv2_3786_3 HRGMv2_3786_3_22 29141 30334 - 3.A.1.5.20
STP HRGMv2_3786_3 HRGMv2_3786_3_23 30357 30890 - NUDIX
TC HRGMv2_3786_3 HRGMv2_3786_3_24 30887 33481 - 3.A.9.1.2
Gene ID: HRGMv2_3786_3_13
Type: TC
Location: 13945 - 16512 (+)
Gene ID: HRGMv2_3786_3_14
Type: TC
Location: 16533 - 19097 (+)
Gene ID: HRGMv2_3786_3_15
Type: TC
Location: 19397 - 21076 (+)
Gene ID: HRGMv2_3786_3_16
Type: pfam
Location: 21166 - 21861 (+)
Gene ID: HRGMv2_3786_3_17
Type: pfam
Location: 21915 - 22427 (+)
Gene ID: HRGMv2_3786_3_18
Type: CAZyme
Location: 22680 - 24332 (+)
Gene ID: HRGMv2_3786_3_19
Type: CAZyme
Location: 24438 - 26633 (-)
Gene ID: HRGMv2_3786_3_20
Type: pfam
Location: 26656 - 28548 (-)
Gene ID: HRGMv2_3786_3_21
Type: pfam
Location: 28541 - 29095 (-)
Gene ID: HRGMv2_3786_3_22
Type: TC
Location: 29141 - 30334 (-)
Gene ID: HRGMv2_3786_3_23
Type: STP
Location: 30357 - 30890 (-)
Gene ID: HRGMv2_3786_3_24
Type: TC
Location: 30887 - 33481 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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