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Cluster: HRGMv2_3786_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3786_2 HRGMv2_3786_2_18 18957 19931 - 3.A.1.2.9
TC HRGMv2_3786_2 HRGMv2_3786_2_19 19935 20903 - 3.A.1.2.15
TC HRGMv2_3786_2 HRGMv2_3786_2_20 20900 22378 - 3.A.1.2.1
NULL(UNKNOWN) HRGMv2_3786_2 HRGMv2_3786_2_21 22529 23059 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3786_2 HRGMv2_3786_2_22 23125 25596 - GH163
pfam HRGMv2_3786_2 HRGMv2_3786_2_23 25967 26767 + AP_endonuc_2
pfam HRGMv2_3786_2 HRGMv2_3786_2_24 26876 28000 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme HRGMv2_3786_2 HRGMv2_3786_2_25 28243 29370 - GH177
Gene ID: HRGMv2_3786_2_18
Type: TC
Location: 18957 - 19931 (-)
Gene ID: HRGMv2_3786_2_19
Type: TC
Location: 19935 - 20903 (-)
Gene ID: HRGMv2_3786_2_20
Type: TC
Location: 20900 - 22378 (-)
Gene ID: HRGMv2_3786_2_21
Type:
Location: 22529 - 23059 (-)
Gene ID: HRGMv2_3786_2_22
Type: CAZyme
Location: 23125 - 25596 (-)
Gene ID: HRGMv2_3786_2_23
Type: pfam
Location: 25967 - 26767 (+)
Gene ID: HRGMv2_3786_2_24
Type: pfam
Location: 26876 - 28000 (+)
Gene ID: HRGMv2_3786_2_25
Type: CAZyme
Location: 28243 - 29370 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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