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Cluster: HRGMv2_3786_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3786_25 HRGMv2_3786_25_7 5965 6378 - 1.A.30.2.7
TC HRGMv2_3786_25 HRGMv2_3786_25_8 6381 7469 - 1.A.30.2.2
pfam HRGMv2_3786_25 HRGMv2_3786_25_9 7634 8767 + ROK
TC HRGMv2_3786_25 HRGMv2_3786_25_10 9485 10255 - 3.A.1.139.3
TC HRGMv2_3786_25 HRGMv2_3786_25_11 10245 10937 - 3.A.1.139.2
sulfatase HRGMv2_3786_25 HRGMv2_3786_25_12 11128 13032 + S1_61
pfam HRGMv2_3786_25 HRGMv2_3786_25_13 13050 13904 + Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme HRGMv2_3786_25 HRGMv2_3786_25_14 13947 14855 - GT2
Gene ID: HRGMv2_3786_25_7
Type: TC
Location: 5965 - 6378 (-)
Gene ID: HRGMv2_3786_25_8
Type: TC
Location: 6381 - 7469 (-)
Gene ID: HRGMv2_3786_25_9
Type: pfam
Location: 7634 - 8767 (+)
Gene ID: HRGMv2_3786_25_10
Type: TC
Location: 9485 - 10255 (-)
Gene ID: HRGMv2_3786_25_11
Type: TC
Location: 10245 - 10937 (-)
Gene ID: HRGMv2_3786_25_12
Type: sulfatase
Location: 11128 - 13032 (+)
Gene ID: HRGMv2_3786_25_13
Type: pfam
Location: 13050 - 13904 (+)
Gene ID: HRGMv2_3786_25_14
Type: CAZyme
Location: 13947 - 14855 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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