Cluster: HRGMv2_3786_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3786
- CGC Family ID: CGCFAM_00104
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3786_24 | HRGMv2_3786_24_13 | 9922 | 11895 | + | CE20 |
| NULL(UNKNOWN) | HRGMv2_3786_24 | HRGMv2_3786_24_14 | 11930 | 12277 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3786_24 | HRGMv2_3786_24_15 | 12292 | 12687 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3786_24 | HRGMv2_3786_24_16 | 12713 | 13885 | - | GT4 |
| pfam | HRGMv2_3786_24 | HRGMv2_3786_24_17 | 13936 | 16248 | - | Competence |
| NULL(UNKNOWN) | HRGMv2_3786_24 | HRGMv2_3786_24_18 | 16290 | 16553 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3786_24 | HRGMv2_3786_24_19 | 17076 | 18116 | + | 9.B.18.2.1 |
Gene ID: HRGMv2_3786_24_13
Type: CAZyme
Location: 9922 - 11895 (+)
Type: CAZyme
Location: 9922 - 11895 (+)
Gene ID: HRGMv2_3786_24_14
Type:
Location: 11930 - 12277 (+)
Type:
Location: 11930 - 12277 (+)
Gene ID: HRGMv2_3786_24_15
Type:
Location: 12292 - 12687 (-)
Type:
Location: 12292 - 12687 (-)
Gene ID: HRGMv2_3786_24_16
Type: CAZyme
Location: 12713 - 13885 (-)
Type: CAZyme
Location: 12713 - 13885 (-)
Gene ID: HRGMv2_3786_24_17
Type: pfam
Location: 13936 - 16248 (-)
Type: pfam
Location: 13936 - 16248 (-)
Gene ID: HRGMv2_3786_24_18
Type:
Location: 16290 - 16553 (-)
Type:
Location: 16290 - 16553 (-)
Gene ID: HRGMv2_3786_24_19
Type: TC
Location: 17076 - 18116 (+)
Type: TC
Location: 17076 - 18116 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Lentisphaeria
Order
Victivallales
Family
Victivallaceae
Genus
CAAGED01
Species
CAAGED01 sp900768505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.